tt.junction.standardize('CALSVAGFGNVLHC') returns 'CCALSVAGFGNVLHCF'
This return seems doubly wrong. In the absence of specified J-gene, a C at IMGT position 118 could be correct. Furthermore the supplied junction already starts with a 'C' so no cysteine should be pre-pended.
Happy to prepare a PR to fix this, but wanted to get a quick sense check first.
tt.junction.standardize('CALSVAGFGNVLHC')returns'CCALSVAGFGNVLHCF'This return seems doubly wrong. In the absence of specified J-gene, a C at IMGT position 118 could be correct. Furthermore the supplied junction already starts with a 'C' so no cysteine should be pre-pended.
Happy to prepare a PR to fix this, but wanted to get a quick sense check first.