-
Notifications
You must be signed in to change notification settings - Fork 0
Expand file tree
/
Copy pathNAMESPACE
More file actions
73 lines (72 loc) · 2.01 KB
/
NAMESPACE
File metadata and controls
73 lines (72 loc) · 2.01 KB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
# Generated by roxygen2: do not edit by hand
export(ConditionalShannonEntropy)
export(DownSample)
export(ExtractMTX)
export(FastQDesign)
export(FindAllMarkersByCondition)
export(FindPseudotime)
export(FixedNumClusters)
export(JaccardIndex)
export(MarkerGeneFilter)
export(OptimalNumClusters)
export(PPV)
export(RootNodeSelect)
export(SampleMatch)
export(SamplePrep)
export(fastF_bam2db)
export(fastF_crb)
export(fastF_extract)
export(fastF_filter)
export(fastF_freq)
import(glmGamPoi)
importFrom(Matrix,colSums)
importFrom(RColorBrewer,brewer.pal)
importFrom(Seurat,DefaultAssay)
importFrom(Seurat,FindAllMarkers)
importFrom(Seurat,FindClusters)
importFrom(Seurat,FindMarkers)
importFrom(Seurat,FindNeighbors)
importFrom(Seurat,Idents)
importFrom(Seurat,RunPCA)
importFrom(Seurat,RunUMAP)
importFrom(Seurat,SCTransform)
importFrom(Seurat,as.CellDataSet)
importFrom(SummarizedExperiment,colData)
importFrom(dplyr,arrange)
importFrom(dplyr,desc)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,mutate)
importFrom(dplyr,pull)
importFrom(dplyr,slice_head)
importFrom(fpc,prediction.strength)
importFrom(ggplot2,geom_hline)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_text)
importFrom(ggplot2,geom_vline)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,guides)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_fill_gradientn)
importFrom(ggplot2,scale_shape_manual)
importFrom(ggplot2,scale_x_continuous)
importFrom(ggplot2,scale_y_continuous)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(igraph,degree)
importFrom(jsonlite,fromJSON)
importFrom(magrittr,"%>%")
importFrom(monocle3,cluster_cells)
importFrom(monocle3,learn_graph)
importFrom(monocle3,order_cells)
importFrom(monocle3,principal_graph)
importFrom(monocle3,pseudotime)
importFrom(patchwork,plot_layout)
importFrom(patchwork,wrap_plots)
importFrom(purrr,map)
importFrom(purrr,map2)
importFrom(scales,cut_short_scale)
importFrom(scales,label_number)
importFrom(scam,scam)
importFrom(tibble,rownames_to_column)