finish get-started

Author: yuw444

.github/workflows/pkgdown.yaml

@@ -24,13 +24,6 @@ jobs:
       contents: write
     steps:
       - uses: actions/checkout@v4
-      # 👇 Add this block back in for your C libs
-      - name: Install system dependencies (GSL, HTSlib, OpenMP)
-        run: |
-          sudo apt-get update
-          sudo apt-get install -y \
-            libgsl-dev \
-            libomp-dev
 
       - uses: r-lib/actions/setup-pandoc@v2
 

.gitignore

@@ -10,3 +10,5 @@ paper/
 inst/doc
 doc/
 /Meta/
+docs
+AGENTS.md

.vscode/c_cpp_properties.json

@@ -5,11 +5,15 @@
 #' @param designMatrix A matrix of design features for prediction
 #' @return A list containing the predicted values
 #'
-predict.Rforce <- function(forest, designMatrix) {
+predict.Rforce <- function(forest, designMatrix = NULL) {
   if (!inherits(forest, "Rforce")) {
     stop("forest must be an Rforce object.")
   }
 
+  if (is.null(designMatrix)) {
+    return(forest$predicted)
+  }
+
   if (!is.data.frame(designMatrix) && !is.matrix(designMatrix)) {
     stop("designMatrix must be a data frame or matrix.")
   }
@@ -21,7 +25,7 @@ predict.Rforce <- function(forest, designMatrix) {
   )
 }
 
-vimp <- function(object, ...) {
+vimp <- function(object) {
   UseMethod("vimp")
 }