Merge branch 'atcollab:master' into master

Author: yysigari

.github/workflows/build-python-wheels.yml

@@ -13,7 +13,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     strategy:
       matrix:
-        os: [ubuntu-22.04, macos-12, windows-2022]
+        os: [ubuntu-latest, windows-latest, macos-13, macos-14]
 
     steps:
       - uses: actions/checkout@v4
@@ -22,18 +22,18 @@ jobs:
           # see: https://github.com/pypa/setuptools_scm/issues/480
           fetch-depth: 0
 
-      - name: Install Python
+      - name: Set up Python 3.12
         uses: actions/setup-python@v5
         with:
-          python-version: '3.9'
+          python-version: 3.12
 
       - name: Build wheels
-        uses: pypa/cibuildwheel@v2.16.2
+        uses: pypa/cibuildwheel@v2.22
 
       - name: Upload wheels
-        uses: actions/upload-artifact@v3
+        uses: actions/upload-artifact@v4
         with:
-          name: wheels
+          name: wheels-${{ matrix.os }}
           path: ./wheelhouse/*.whl
           if-no-files-found: error
 
@@ -59,7 +59,7 @@ jobs:
         run: python -m build --sdist
 
       - name: Upload sdist
-        uses: actions/upload-artifact@v3
+        uses: actions/upload-artifact@v4
         with:
           name: tar.gz
           path: ./dist/*.tar.gz

.github/workflows/docs.yml

@@ -0,0 +1,58 @@
+name: Deploy static content to Pages
+
+on:
+  # Runs on pushes targeting the default branch
+  push:
+    branches: ["master"]
+
+  # Allows you to run this workflow manually from the Actions tab
+  workflow_dispatch:
+
+# Sets permissions of the GITHUB_TOKEN to allow deployment to GitHub Pages
+permissions:
+  contents: read
+  pages: write
+  id-token: write
+
+# Allow only one concurrent deployment, skipping runs queued between the run in-progress and latest queued.
+# However, do NOT cancel in-progress runs as we want to allow these production deployments to complete.
+concurrency:
+  group: "pages"
+  cancel-in-progress: false
+
+jobs:
+  # Single deploy job since we're just deploying
+  deploy:
+    environment:
+      name: github-pages
+      url: ${{ steps.deployment.outputs.page_url }}
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+        with:
+          # Necessary to fetch tags and allow setuptools_scm
+          # see: https://github.com/pypa/setuptools_scm/issues/480
+          fetch-depth: 0
+
+      - name: Set up Python
+        uses: actions/setup-python@v5
+        with:
+          python-version: 3.12
+          cache: pip
+
+      - name: Build and install at
+        run: python -m pip install ".[plot, doc]"
+
+      - name: Compile documentation
+        run: make html
+        working-directory: docs
+
+      - name: Upload artifact
+        uses: actions/upload-pages-artifact@v3
+        with:
+          path: 'docs/_build/html'
+          
+      - name: Deploy to GitHub Pages
+        id: deployment
+        uses: actions/deploy-pages@v4

.github/workflows/documentation.yml

@@ -20,33 +20,33 @@ jobs:
 
     strategy:
       matrix:
-        os: [ubuntu-latest, macos-latest, windows-latest]
+        os: [ubuntu-latest, macos-13, windows-latest]
 
     steps:
 
     - uses: actions/checkout@v4
 
-    - name: Set up python 3.9
+    - name: Set up python
       uses: actions/setup-python@v5
       with:
-        python-version: '3.9'
+        python-version: '3.11'
         cache: pip
 
     - name: Set up MATLAB
-      uses: matlab-actions/setup-matlab@v1
+      uses: matlab-actions/setup-matlab@v2
       with:
-        release: R2022a
+        release: R2024a
 
     - name: Atmexall
-      uses: matlab-actions/run-command@v1
+      uses: matlab-actions/run-command@v2
       with:
         command: run('atmat/atpath');githubsetup();
 
     - name: Build and install at
       run: python -m pip install .
 
     - name: Run tests
-      uses: matlab-actions/run-command@v1
+      uses: matlab-actions/run-command@v2
       with:
         command: githubrun
 #

.github/workflows/matlab-tests.yml

@@ -6,7 +6,6 @@ name: Build Python extension and run tests
 
 on:
   push:
-  pull_request:
 
 jobs:
   build_and_run_tests:
@@ -16,11 +15,20 @@ jobs:
 
     strategy:
       matrix:
-        python-version: ['3.7', '3.8', '3.9', '3.10', '3.11', '3.12']
-        os: [macos-latest, ubuntu-latest, windows-latest]
-        exclude:
-          - os: windows-latest
+        python-version: ['3.9', '3.10', '3.11', '3.12', '3.13']
+        os: [macos-13, macos-latest, ubuntu-latest, windows-latest]
+        include:
+          - os: macos-13
+            python-version: '3.7'
+          - os: macos-13
+            python-version: '3.8'
+          - os: ubuntu-22.04
             python-version: '3.7'
+          - os: ubuntu-22.04
+            python-version: '3.8'
+          - os: windows-latest
+            python-version: '3.8'
+
 
     steps:
 

.github/workflows/python-tests.yml

@@ -5,9 +5,11 @@
 *.mex
 *.mexa64
 *.mexmaci64
+*.mexw64
 
 # Compiled python
 *.pyc
+*.pyd
 
 # pytest cache
 .cache

.gitignore

@@ -9,7 +9,7 @@ version: 2
 build:
   os: ubuntu-20.04
   tools:
-    python: "3.9"
+    python: "3.10"
     # You can also specify other tool versions:
     # nodejs: "16"
     # rust: "1.55"