chore: update dependencies

targos · targos · commit bb33671a2750 · 2025-07-15T08:33:21.000+02:00
diff --git a/package-lock.json b/package-lock.json
diff --git a/package.json b/package.json
@@ -56,15 +56,15 @@
     "react-dom": ">=18.0.0"
   },
   "dependencies": {
-    "@atlaskit/pragmatic-drag-and-drop": "^1.7.2",
+    "@atlaskit/pragmatic-drag-and-drop": "^1.7.4",
     "@atlaskit/pragmatic-drag-and-drop-auto-scroll": "^2.1.1",
     "@atlaskit/pragmatic-drag-and-drop-hitbox": "^1.1.0",
-    "@emotion/styled": "^11.14.0",
+    "@emotion/styled": "^11.14.1",
     "@radix-ui/react-use-controllable-state": "^1.2.2",
     "@tanstack/react-table": "^8.21.3",
-    "@tanstack/react-virtual": "^3.13.10",
+    "@tanstack/react-virtual": "^3.13.12",
     "d3-scale-chromatic": "^3.1.0",
-    "react-d3-utils": "^3.1.0",
+    "react-d3-utils": "^3.1.1",
     "react-dropzone": "^14.3.8",
     "react-full-screen": "^1.1.1",
     "react-icons": "^5.5.0",
@@ -76,39 +76,39 @@
     "@blueprintjs/core": "6.0.0",
     "@blueprintjs/icons": "6.0.0",
     "@blueprintjs/select": "6.0.0",
-    "@floating-ui/react": "^0.27.12",
-    "@playwright/experimental-ct-react": "^1.53.0",
-    "@playwright/test": "^1.53.0",
-    "@storybook/addon-docs": "^9.0.8",
-    "@storybook/react-vite": "^9.0.8",
-    "@tanstack/react-query": "^5.80.7",
+    "@floating-ui/react": "^0.27.13",
+    "@playwright/experimental-ct-react": "^1.54.1",
+    "@playwright/test": "^1.54.1",
+    "@storybook/addon-docs": "^9.0.16",
+    "@storybook/react-vite": "^9.0.16",
+    "@tanstack/react-query": "^5.83.0",
     "@types/babel__core": "^7.20.5",
     "@types/d3-scale-chromatic": "^3.1.0",
-    "@types/node": "^22.15.29",
+    "@types/node": "^24.0.13",
     "@types/react": "^18.3.12",
     "@types/react-dom": "^18.3.1",
     "@types/tinycolor2": "^1.4.6",
-    "@vitejs/plugin-react": "^4.5.2",
-    "@vitest/coverage-v8": "^3.2.3",
+    "@vitejs/plugin-react": "^4.6.0",
+    "@vitest/coverage-v8": "^3.2.4",
     "biologic-converter": "^0.6.0",
     "cheminfo-font": "^1.13.1",
     "cheminfo-types": "^1.8.1",
     "cross-env": "^7.0.3",
-    "eslint": "^9.28.0",
-    "eslint-config-zakodium": "^15.0.1",
-    "eslint-plugin-storybook": "^9.0.8",
+    "eslint": "^9.31.0",
+    "eslint-config-zakodium": "^16.0.0",
+    "eslint-plugin-storybook": "^9.0.16",
     "fifo-logger": "^2.0.0",
     "filelist-utils": "^1.11.3",
     "immer": "^10.1.1",
     "jcampconverter": "^11.0.3",
-    "ml-gsd": "^12.1.8",
-    "ml-peak-shape-generator": "^4.1.4",
-    "ml-signal-processing": "^1.2.0",
-    "ml-spectra-processing": "^14.12.0",
+    "ml-gsd": "^13.0.1",
+    "ml-peak-shape-generator": "^4.2.0",
+    "ml-signal-processing": "^2.0.0",
+    "ml-spectra-processing": "^14.13.0",
     "ms-spectrum": "^3.9.0",
     "netcdfjs": "^3.0.0",
     "postcss-styled-syntax": "^0.7.1",
-    "prettier": "^3.5.3",
+    "prettier": "^3.6.2",
     "react": "^18.3.1",
     "react-dom": "^18.3.1",
     "react-error-boundary": "^6.0.0",
@@ -117,12 +117,12 @@
     "react-plot": "^3.1.0",
     "rimraf": "^6.0.1",
     "spc-parser": "^1.0.0",
-    "storybook": "^9.0.8",
-    "stylelint": "^16.20.0",
+    "storybook": "^9.0.16",
+    "stylelint": "^16.21.1",
     "stylelint-config-standard": "^38.0.0",
     "typescript": "^5.8.3",
-    "vite": "^6.3.5",
-    "vitest": "^3.2.3",
+    "vite": "^7.0.4",
+    "vitest": "^3.2.4",
     "wdf-parser": "^0.3.0"
   },
   "volta": {
diff --git a/src/app-data/state/index.ts b/src/app-data/state/index.ts
@@ -1,12 +1,12 @@
 export {
-  type AppState,
-  type AppLoad,
-  useAppState,
   type AppDispatch,
-  useAppDispatch,
+  type AppLoad,
+  type AppState,
   useAppData,
-  useAppView,
+  useAppDispatch,
   useAppSettings,
+  useAppState,
+  useAppView,
 } from './app_state.js';
 export { AppStateProvider } from './app_state.provider.js';
 export * from './data/index.js';
diff --git a/src/app/kinds/mass/MeasurementMassPlot.tsx b/src/app/kinds/mass/MeasurementMassPlot.tsx
@@ -1,5 +1,5 @@
 import { xyToXYObject } from 'ml-spectra-processing';
-import { getBestPeaks, Spectrum } from 'ms-spectrum';
+import { Spectrum, getBestPeaks } from 'ms-spectrum';
 import { useMemo } from 'react';
 import {
   Annotation,
diff --git a/src/app/panels/SignalProcessingPanel.tsx b/src/app/panels/SignalProcessingPanel.tsx
@@ -1,10 +1,10 @@
 import type { FilterXYType } from 'ml-signal-processing';
-import filterXY from 'ml-signal-processing/FilterXYSchema.js';
+import filterXY from 'ml-signal-processing/FilterXYSchema.json' with { type: 'json' };
 
 import {
   Button,
-  createTableColumnHelper,
   Table,
+  createTableColumnHelper,
 } from '../../components/index.js';
 
 export interface Filter<OptionsType = string | number> {
diff --git a/src/app/panels/measurement-config/MeasurementConfigPanel.tsx b/src/app/panels/measurement-config/MeasurementConfigPanel.tsx
@@ -3,8 +3,8 @@ import {
   useAppDispatch,
   useAppState,
 } from '../../../app-data/index.js';
-import { ColorPickerDropdown } from '../../../components/index.js';
 import type { ColorConfig } from '../../../components/index.js';
+import { ColorPickerDropdown } from '../../../components/index.js';
 
 export function MeasurementConfigPanel() {
   const dispatch = useAppDispatch();
diff --git a/src/app/panels/measurements/MeasurementColorPreview.tsx b/src/app/panels/measurements/MeasurementColorPreview.tsx
@@ -1,10 +1,10 @@
 import styled from '@emotion/styled';
 import {
-  autoUpdate,
-  flip,
   FloatingFocusManager,
   FloatingOverlay,
   FloatingPortal,
+  autoUpdate,
+  flip,
   offset,
   shift,
   useDismiss,
@@ -18,9 +18,9 @@ import type { MeasurementKind } from '../../../app-data/index.js';
 import { useAppDispatch } from '../../../app-data/index.js';
 import type { ColorConfig } from '../../../components/index.js';
 import {
-  assert,
   ColorPicker,
   ColorPreview,
+  assert,
   useOnOff,
 } from '../../../components/index.js';
 
diff --git a/src/components/color-picker/react-color/helpers/color.ts b/src/components/color-picker/react-color/helpers/color.ts
@@ -91,10 +91,10 @@ const red = {
 };
 
 export {
-  red,
-  isvalidColorString,
   getContrastingColor,
   isValidHex,
+  isvalidColorString,
+  red,
   simpleCheckForValidColor,
   toState,
 };
diff --git a/src/components/hooks/useDoubleClick.ts b/src/components/hooks/useDoubleClick.ts
@@ -1,4 +1,4 @@
-import { useRef, useCallback, useEffect } from 'react';
+import { useCallback, useEffect, useRef } from 'react';
 
 export interface UseDoubleClickOptions<EventData> {
   onClick: (data: EventData) => void;
diff --git a/src/components/hooks/useOnOff.ts b/src/components/hooks/useOnOff.ts
@@ -1,4 +1,4 @@
-import { useState, useCallback } from 'react';
+import { useCallback, useState } from 'react';
 
 export function useOnOff(
   initialValue = false,
diff --git a/src/components/info-panel/InfoPanel.tsx b/src/components/info-panel/InfoPanel.tsx
@@ -2,11 +2,11 @@ import { Classes, Collapse, InputGroup } from '@blueprintjs/core';
 import styled from '@emotion/styled';
 import type { CSSProperties } from 'react';
 import { memo, useCallback, useMemo, useState } from 'react';
-import { match, P } from 'ts-pattern';
+import { P, match } from 'ts-pattern';
 
 import { Button } from '../button/Button.js';
 import { SelectedTotal } from '../selected-total/index.js';
-import { createTableColumnHelper, Table } from '../table/index.js';
+import { Table, createTableColumnHelper } from '../table/index.js';
 import { shouldForwardPropExcept } from '../utils/shouldForwardPropExcept.js';
 import * as ValueRenderers from '../value-renderers/index.js';
 
diff --git a/src/components/logger/FifoLoggerDialog.tsx b/src/components/logger/FifoLoggerDialog.tsx
@@ -5,7 +5,7 @@ import type { CSSProperties } from 'react';
 import { useMemo } from 'react';
 
 import { Button } from '../button/index.js';
-import { createTableColumnHelper, Table } from '../table/index.js';
+import { Table, createTableColumnHelper } from '../table/index.js';
 
 import { useFifoLogger } from './useFifoLogger.js';
 
diff --git a/src/components/pdnd.cts b/src/components/pdnd.cts
@@ -14,7 +14,7 @@ export {
 export { monitorForElements } from '@atlaskit/pragmatic-drag-and-drop/element/adapter';
 export { autoScrollForElements } from '@atlaskit/pragmatic-drag-and-drop-auto-scroll/element';
 export {
-  extractClosestEdge,
   attachClosestEdge,
+  extractClosestEdge,
 } from '@atlaskit/pragmatic-drag-and-drop-hitbox/closest-edge';
 export { getReorderDestinationIndex } from '@atlaskit/pragmatic-drag-and-drop-hitbox/util/get-reorder-destination-index';
diff --git a/src/components/table/table_body.tsx b/src/components/table/table_body.tsx
@@ -10,8 +10,8 @@ import { TableRowCell } from './table_row_cell.js';
 import type {
   GetTdProps,
   TableRowPreviewRenderer,
-  TableRowTrRenderer,
   TableRowTrRenderProps,
+  TableRowTrRenderer,
 } from './table_utils.js';
 
 interface TableBodyProps<TData extends RowData> {
diff --git a/stories/components/context-menu.stories.tsx b/stories/components/context-menu.stories.tsx
@@ -3,9 +3,9 @@ import styled from '@emotion/styled';
 import type { ReactElement } from 'react';
 
 import {
-  createTableColumnHelper,
   Table,
   ValueRenderers,
+  createTableColumnHelper,
 } from '../../src/components/index.js';
 import { table } from '../data/data.js';
 
diff --git a/stories/components/drop-zone.stories.tsx b/stories/components/drop-zone.stories.tsx
@@ -3,10 +3,10 @@ import { useState } from 'react';
 import type { FileWithPath } from 'react-dropzone';
 
 import {
-  createTableColumnHelper,
   DropZone,
   DropZoneContainer,
   Table,
+  createTableColumnHelper,
 } from '../../src/components/index.js';
 
 export default {
diff --git a/stories/components/editable.stories.tsx b/stories/components/editable.stories.tsx
@@ -2,7 +2,7 @@ import { Button } from '@blueprintjs/core';
 import type { StoryObj } from '@storybook/react-vite';
 import { useCallback, useMemo, useState } from 'react';
 
-import { createTableColumnHelper, Table } from '../../src/components/index.js';
+import { Table, createTableColumnHelper } from '../../src/components/index.js';
 import {
   InlineEditable as InlineEditableComponent,
   InlineEditableInput,
diff --git a/stories/components/split_pane.advanced.stories.tsx b/stories/components/split_pane.advanced.stories.tsx
@@ -6,8 +6,8 @@ import type { SplitPaneSize } from '../../src/components/index.js';
 import {
   Accordion,
   AccordionProvider,
-  parseSize,
   SplitPane,
+  parseSize,
 } from '../../src/components/index.js';
 
 import { SplitPanelChildContent } from './split_pane.utils.js';
diff --git a/stories/components/table_columns.tsx b/stories/components/table_columns.tsx
@@ -2,8 +2,8 @@ import styled from '@emotion/styled';
 import { IdcodeSvgRenderer } from 'react-ocl';
 
 import {
-  createTableColumnHelper,
   ValueRenderers,
+  createTableColumnHelper,
 } from '../../src/components/index.js';
 import type { table } from '../data/data.js';
 
diff --git a/stories/components/table_reordering.stories.tsx b/stories/components/table_reordering.stories.tsx
@@ -5,10 +5,10 @@ import { action } from 'storybook/actions';
 
 import type { GetTdProps, TableProps } from '../../src/components/index.js';
 import {
-  createTableColumnHelper,
   Table,
-  TableDraggableRowTr,
   TableDragRowHandler,
+  TableDraggableRowTr,
+  createTableColumnHelper,
 } from '../../src/components/index.js';
 import { table } from '../data/data.js';
 

Original file line number	Diff line number	Diff line change
`@@ -1,4 +1,4 @@`
`1`		`-import { useRef, useCallback, useEffect } from 'react';`
	`1`	`+import { useCallback, useEffect, useRef } from 'react';`
`2`	`2`
`3`	`3`	`export interface UseDoubleClickOptions<EventData> {`
`4`	`4`	`onClick: (data: EventData) => void;`
Original file line number	Diff line number	Diff line change
`@@ -1,4 +1,4 @@`
`1`		`-import { useState, useCallback } from 'react';`
	`1`	`+import { useCallback, useState } from 'react';`
`2`	`2`
`3`	`3`	`export function useOnOff(`
`4`	`4`	`initialValue = false,`