TemperatureDependentCelegansAging_Spang/.gitignore at main · zavolanlab/TemperatureDependentCelegansAging_Spang · GitHub

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configuration
# ========================

# Ignore ALL .env files anywhere in the project
*.env

# EXCEPT for the safe template (force Git to track this one)
!TemperatureDependentCelegansAging_Spang.template.env

# ========================
# 2. Snakemake Hidden Files
# ========================
# Snakemake's internal tracking directory (can get massive)
.snakemake/
# Standard workflow output directories (keeps data off GitHub)
results/
logs/
data/

# ========================
# 3. Python & Jupyter Junk
# ========================
# Jupyter autosaves
.ipynb_checkpoints/
# Python compiled bytecode
__pycache__/
*.py[cod]
# all jupyter notebooks...
*.ipynb
# except the currently prepared notebook
!TemperatureDependentCelegansAging_Spang.current.ipynb

# ========================
# 4. Hugging Face Uploading script with FILLED IN token
# ========================

upload_to_hf.with_token.py

# ========================
# 4. OS / System Files
# ========================
.DS_Store
Thumbs.db

# ========================
# # 5. Tool Caches & Hidden Dirs
# # ========================
WF/.java/
WF/.cache/

# Environment and tool caches
.java/
.cache/