Error in test script

[gadiscymraes]

I'm following the steps in the README. I have the repository cloned and have created the environment. I am in the root directory and the environment is activated. Now I am on step 5 - testing the execution but I get the following error:

$ bash execute/run_local_conda_test.sh
SyntaxError in line 96 of /home/tandem-pas-main/Snakefile:
Unexpected keyword singularity in rule definition (Snakefile, line 96)

I have singularity installed and working.
I have no experience with Snakemake so not sure how to fix.

Any help appreciated! Thank you!

[dominikburri]

Which snakemake version is installed in the activated environment? It could be that snakemake v8 was installed, which might not support this keyword anymore.
You could also try to replace "singularity" with "container" in the mentioned file.