Release v0.2.0 #69
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| name: Test | |
| on: | |
| - push | |
| - pull_request | |
| jobs: | |
| test_linux: | |
| name: Test (Linux, x86-64) | |
| runs-on: ubuntu-latest | |
| env: | |
| OS: Linux | |
| strategy: | |
| matrix: | |
| include: | |
| - python-version: "3.9" | |
| python-release: v3.9 | |
| python-impl: CPython | |
| - python-version: "3.10" | |
| python-release: v3.10 | |
| python-impl: CPython | |
| - python-version: "3.11" | |
| python-release: v3.11 | |
| python-impl: CPython | |
| - python-version: "3.12" | |
| python-release: v3.12 | |
| python-impl: CPython | |
| - python-version: "3.13" | |
| python-release: v3.13 | |
| python-impl: CPython | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v3 | |
| - name: Setup Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Setup Rust | |
| uses: dtolnay/rust-toolchain@stable | |
| - name: Update CI requirements | |
| run: python -m pip install -U -r .github/workflows/requirements.txt | |
| - name: Build and install package | |
| run: python -m pip install -e . -vv | |
| - name: Download MMseqs2 | |
| run: sh ./misc/download-mmseqs.sh /usr/local/bin | |
| - name: Run unit tests | |
| run: python -m unittest discover -vv | |
| - name: Download test data | |
| run: "wget 'https://dl.secondarymetabolites.org/mibig/mibig_gbk_3.1.tar.gz' -O- | tar xzO --wildcards \\*.gbk > mibig3.gbk" | |
| - name: Test run | |
| run: igua -g mibig3.gbk -o mibig3.tsv | |
| test_osx: | |
| name: Test (OSX, x86-64) | |
| runs-on: macos-latest | |
| env: | |
| OS: OSX | |
| strategy: | |
| matrix: | |
| include: | |
| - python-version: "3.9" | |
| python-release: v3.9 | |
| python-impl: CPython | |
| - python-version: "3.10" | |
| python-release: "v3.10" | |
| python-impl: CPython | |
| - python-version: "3.11" | |
| python-release: "v3.11" | |
| python-impl: CPython | |
| - python-version: "3.12" | |
| python-release: "v3.12" | |
| python-impl: CPython | |
| - python-version: "3.13" | |
| python-release: "v3.13" | |
| python-impl: CPython | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v3 | |
| - name: Setup Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Setup Rust | |
| uses: dtolnay/rust-toolchain@stable | |
| - name: Update CI requirements | |
| run: python -m pip install -U -r .github/workflows/requirements.txt | |
| - name: Build and install package | |
| run: python -m pip install -e . -vv | |
| - name: Download MMseqs2 | |
| run: sh ./misc/download-mmseqs.sh /usr/local/bin | |
| - name: Run unit tests | |
| run: python -m unittest discover -vv | |
| - name: Download test data | |
| run: "wget 'https://dl.secondarymetabolites.org/mibig/mibig_gbk_3.1.tar.gz' -O- | tar xzO \\*.gbk > mibig3.gbk" | |
| - name: Test run | |
| run: igua -g mibig3.gbk -o mibig3.tsv | |
| # coverage: | |
| # name: Coverage | |
| # runs-on: ubuntu-latest | |
| # strategy: | |
| # matrix: | |
| # include: | |
| # - python-version: "3.13" | |
| # python-release: "v3.13" | |
| # python-impl: CPython | |
| # steps: | |
| # - name: Checkout code | |
| # uses: actions/checkout@v3 | |
| # - name: Set up Python ${{ matrix.python-version }} | |
| # uses: actions/setup-python@v5 | |
| # with: | |
| # python-version: ${{ matrix.python-version }} | |
| # - name: Setup Rust | |
| # uses: dtolnay/rust-toolchain@stable | |
| # - name: Install tarpaulin | |
| # run: cargo install cargo-tarpaulin | |
| # - name: Measure code coverage | |
| # run: cargo tarpaulin -v --out Xml --ciserver github-actions | |
| # - name: Upload coverage statistics | |
| # uses: codecov/codecov-action@v2 |