flowo/pyproject.toml at main · zhanghaomiao/flowo · GitHub

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[build-system]
build-backend = "hatchling.build"
requires = ["hatchling"]

[tool.hatch.build.targets.wheel]
packages = ["src/flowo_common", "src/snakemake_logger_plugin_flowo"]

[project]
authors = [
  {name = "Haomiao Zhang", email = "zhanghm@iregene.com"},
  {name = "Jingmin Zhang", email = "zhangjm@iregene.com"},
]
description = "A unified PostgreSQL-based logging plugin and backend for Snakemake"
license = {text = "MIT"}
name = "snakemake-logger-plugin-flowo"
readme = "README.md"
requires-python = ">=3.12"
version = "2.0.6"

dependencies = [
  "pydantic>=2.11.5",
  "pydantic-settings>=2.9.1",
  "snakemake-interface-logger-plugins",
  "httpx>=0.28.1",
  "tqdm>=4.66.0",
]

[project.optional-dependencies]
snakemake = ["snakemake"]
dev = [
  "pytest>=7.0.0",
  "pytest-asyncio>=0.21.0",
  "black>=23.0.0",
  "ruff>=0.1.0",
  "mypy>=1.0.0",
  "pre-commit>=3.5.0",
]
docs = [
  "mkdocs>=1.6.0",
  "mkdocs-material>=9.5.0",
  "mkdocstrings[python]>=0.25.0",
]
server = [
  "snakemake",
  "sqlalchemy>=2.0.41",
  "psycopg2-binary>=2.9.9",
  "asyncpg>=0.30.0",
  "alembic>=1.16.1",
  "fastapi[standard]>=0.115.12",
  "anytree>=2.13.0",
  "psutil>=7.0.0",
  "sse-starlette>=3.1.2",
  "fastapi-users[sqlalchemy]>=15.0.3",
  "passlib[bcrypt]>=1.7.4",
  "snakevision>=1.0.0",
  "fastapi-mcp>=0.4.0",
]

[dependency-groups]
dev = [
  "snakemake",
  "pytest>=7.0.0",
  "pytest-asyncio>=0.21.0",
  "black>=23.0.0",
  "ruff>=0.1.0",
  "mypy>=1.0.0",
  "pre-commit>=3.5.0",
  "sqlalchemy>=2.0.41",
  "psycopg2-binary>=2.9.9",
  "asyncpg>=0.30.0",
  "alembic>=1.16.1",
  "fastapi[standard]>=0.115.12",
  "anytree>=2.13.0",
  "psutil>=7.0.0",
  "sse-starlette>=3.1.2",
  "fastapi-users[sqlalchemy]>=15.0.3",
  "passlib[bcrypt]>=1.7.4",
  "snakevision>=1.0.0",
  "fastapi-mcp>=0.4.0",
]

[project.scripts]
flowo = "snakemake_logger_plugin_flowo.plugin.client.cli:main"

[project.entry-points."snakemake.log_handlers"]
flowo = "snakemake_logger_plugin_flowo:LogHandler"

[tool.pytest.ini_options]
addopts = "--rootdir=. --import-mode=prepend"
pythonpath = ["."]
asyncio_mode = "auto"

[tool.ruff]
exclude = ["app/alembic/"]
line-length = 88
target-version = "py312"

[tool.ruff.lint]
ignore = ["E501", "B008"]
select = ["E", "W", "F", "I", "B", "C4", "UP"]

[tool.ruff.lint.per-file-ignores]
"__init__.py" = ["F401"]
"tests/conftest.py" = ["E402"]

# Official PyPI default; use UV_INDEX_URL for a regional mirror if needed.
[[tool.uv.index]]
default = true
url = "https://pypi.org/simple"