OSError: /usr/lib/libdrmaa.so.1.0: cannot open shared object file: No such file or directory #36
Description
I try to run SubPhaser but I faced with this error. I use Python 3.8.8 on Ubuntu as Windows Subsystem.
Dear Dr., Could you please help me?
(SubPhaser) eck@DESKTOP-ED16O0T:~/SubPhaser$ subphaser -i genome.fasta.gz -c sg.config
24-08-10 15:19:34 [WARNING] Grid computing is not available because DRMAA not installed: /usr/lib/libdrmaa.so.1.0: cannot open shared object file: No such file or directory
24-08-10 15:19:34 [INFO] No DRMAA (see https://github.com/pygridtools/drmaa-python), Switching to local mode.
Traceback (most recent call last):
File "/home/eck/miniconda3/envs/SubPhaser/bin/subphaser", line 33, in
sys.exit(load_entry_point('subphaser==1.2.6', 'console_scripts', 'subphaser')())
File "/home/eck/miniconda3/envs/SubPhaser/bin/subphaser", line 25, in importlib_load_entry_point
return next(matches).load()
File "/home/eck/miniconda3/envs/SubPhaser/lib/python3.8/importlib/metadata.py", line 77, in load
module = import_module(match.group('module'))
File "/home/eck/miniconda3/envs/SubPhaser/lib/python3.8/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "", line 1014, in _gcd_import
File "", line 991, in _find_and_load
File "", line 975, in _find_and_load_unlocked
File "", line 671, in _load_unlocked
File "", line 783, in exec_module
File "", line 219, in _call_with_frames_removed
File "/home/eck/miniconda3/envs/SubPhaser/lib/python3.8/site-packages/subphaser-1.2.6-py3.8.egg/subphaser/main.py", line 15, in
from . import LTR
File "/home/eck/miniconda3/envs/SubPhaser/lib/python3.8/site-packages/subphaser-1.2.6-py3.8.egg/subphaser/LTR.py", line 9, in
from TEsorter.app import CommonClassifications
File "/home/eck/miniconda3/envs/SubPhaser/lib/python3.8/site-packages/TEsorter/app.py", line 30, in
from .modules.RunCmdsMP import run_cmd, pp_run, pool_func
File "/home/eck/miniconda3/envs/SubPhaser/lib/python3.8/site-packages/TEsorter/modules/RunCmdsMP.py", line 24, in
import drmaa # for grid
File "/home/eck/miniconda3/envs/SubPhaser/lib/python3.8/site-packages/drmaa/init.py", line 65, in
from .session import JobInfo, JobTemplate, Session
File "/home/eck/miniconda3/envs/SubPhaser/lib/python3.8/site-packages/drmaa/session.py", line 39, in
from drmaa.helpers import (adapt_rusage, Attribute, attribute_names_iterator,
File "/home/eck/miniconda3/envs/SubPhaser/lib/python3.8/site-packages/drmaa/helpers.py", line 36, in
from drmaa.wrappers import (drmaa_attr_names_t, drmaa_attr_values_t,
File "/home/eck/miniconda3/envs/SubPhaser/lib/python3.8/site-packages/drmaa/wrappers.py", line 56, in
_lib = CDLL(libpath, mode=RTLD_GLOBAL)
File "/home/eck/miniconda3/envs/SubPhaser/lib/python3.8/ctypes/init.py", line 373, in init
self._handle = _dlopen(self._name, mode)
OSError: /usr/lib/libdrmaa.so.1.0: cannot open shared object file: No such file or directory