DRMAA not configured properly: Could not find drmaa library. #48
Description
I am new to conda programs. What am I doing wrong?
subphaser -i /90daydata/shared/alligatorweed/alligatorweed_final.fasta -c sg.config
25-06-04 11:05:40 [WARNING] Grid computing is not available because DRMAA not configured properly: Could not find drmaa library. Please specify its full path using the environment variable DRMAA_LIBRARY_PATH
25-06-04 11:05:42 [INFO] Command: /home/david.horvath/.conda/envs/SubPhaser/bin/subphaser -i /90daydata/shared/alligatorweed/alligatorweed_final.fasta -c sg.config
25-06-04 11:05:42 [INFO] Version: 1.2.7
25-06-04 11:05:42 [INFO] Arguments: {'genomes': ['/90daydata/shared/alligatorweed/alligatorweed_final.fasta'], 'sg_cfgs': ['sg.config'], 'labels': None, 'no_label': False, 'target': None, 'sg_assigned': None, 'sep': '|', 'custom_features': None, 'prefix': None, 'outdir': 'phase-results', 'tmpdir': 'tmp', 'colors': ['#f9c00c', '#00b9f1', '#7200da', '#f9320c', '#00b8a9', '#F4A460', '#009999', '#00C02E', '#980000', '#00ffff', '#0000ff', '#ff0000', '#4a86e8', '#ff9900', '#ffff00', '#00ff00', '#9900ff', '#ff00ff', '#20124d', '#274e13', '#000000', '#cccccc', '#7f6000', '#a64d79', '#6aa84f', '#fff2cc', '#47a952', '#3ea6b6', '#a5b805', '#8f9276', '#ca8d7c'], 'k': 15, 'min_fold': 2, 'min_freq': 200, 'baseline': 1, 'ratio': 1, 'lower_count': 3, 'min_prop': None, 'max_freq': 1000000000.0, 'max_prop': None, 'low_mem': None, 'by_count': False, 're_filter': False, 'nsg': None, 'replicates': 1000, 'jackknife': 50, 'max_pval': 0.05, 'test_method': 'ttest_ind', 'figfmt': 'pdf', 'heatmap_colors': ('green', 'black', 'red'), 'heatmap_options': "Rowv=T,Colv=T,scale='col',dendrogram='row',labCol=F,trace='none',key=T,key.title=NA,density.info='density',main=NA,xlab='Differential kmers',margins=c(2.5,12)", 'just_core': False, 'disable_ltr': False, 'ltr_detectors': ['ltr_harvest'], 'ltr_finder_options': '-w 2 -D 15000 -d 1000 -L 7000 -l 100 -p 20 -C -M 0.8', 'ltr_harvest_options': '-seqids yes -similar 80 -vic 10 -seed 20 -minlenltr 100 -maxlenltr 7000 -mintsd 4 -maxtsd 6', 'tesorter_options': '-db rexdb -dp2', 'all_ltr': False, 'intact_ltr': False, 'exclude_exchanges': False, 'non_specific': False, 'mu': 1.3e-08, 'disable_ltrtree': False, 'subsample': 1000, 'ltr_domains': ['INT', 'RT', 'RH'], 'trimal_options': '-automated1', 'tree_method': 'FastTree', 'tree_options': '', 'ggtree_options': "branch.length='none', layout='circular'", 'disable_circos': False, 'window_size': 1000000, 'disable_blocks': False, 'aligner': 'minimap2', 'aligner_options': '-x asm20 -n 10', 'min_block': 100000, 'alt_cfgs': None, 'chr_ordered': None, 'ncpu': 32, 'max_memory': '377.4G', 'cleanup': False, 'overwrite': False}
Traceback (most recent call last):
File "/home/david.horvath/.conda/envs/SubPhaser/bin/subphaser", line 33, in
sys.exit(load_entry_point('subphaser==1.2.7', 'console_scripts', 'subphaser')())
File "/home/david.horvath/.conda/envs/SubPhaser/lib/python3.8/site-packages/subphaser-1.2.7-py3.8.egg/subphaser/main.py", line 796, in main
pipeline = Pipeline(**args.dict)
File "/home/david.horvath/.conda/envs/SubPhaser/lib/python3.8/site-packages/subphaser-1.2.7-py3.8.egg/subphaser/main.py", line 276, in init
sgcfg = SGConfig(sgcfg, prefix=label, sep=self.sep)
File "/home/david.horvath/.conda/envs/SubPhaser/lib/python3.8/site-packages/subphaser-1.2.7-py3.8.egg/subphaser/main.py", line 756, in init
self.sgs = list(self)
File "/home/david.horvath/.conda/envs/SubPhaser/lib/python3.8/site-packages/subphaser-1.2.7-py3.8.egg/subphaser/main.py", line 763, in _parse
for line in open(self.sgcfg):
File "/home/david.horvath/.conda/envs/SubPhaser/lib/python3.8/site-packages/xopen/init.py", line 615, in xopen
return open(filename, mode)
FileNotFoundError: [Errno 2] No such file or directory: 'sg.config'