Development #224
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Development #224
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* Updating run solvers to start a job per solver instead of per instance/run combination * Merging run_configured_solver into run_solvers * updating file names to be more clear, adding place holder test for run solvers * Test fix * Fixing specific configuration running * Update changelog * Bugfixes for selection example
* Pathing typos * Updating changelog
* Sprk 361 - Merging run configured solver into run solvers (#123) * Updating run solvers to start a job per solver instead of per instance/run combination * Merging run_configured_solver into run_solvers * updating file names to be more clear, adding place holder test for run solvers * Test fix * Fixing specific configuration running * Update changelog * Bugfixes for selection example * Removing Validation directory from Platform * Reference_List moving into Settings directory * Bugfixes for snapshots * Adding sparkle citation * CLI execution rights fix * Release/0.9.1.1 (#125) * Pathing typos * Updating changelog * Adding init to core module * Patchfix
* Fixing Feature data for SMAC2 configuration * Updating SMAC3 to take features from FDF * Adding feature data to IRACE * Bugfixes smac3 tests * SMAC2 test update * Irace fixes * Changelog update
* Fixing warning messages * Adding python3 infront of python script calls to avoid execution right issues * Changing command log dir naming * Updating Sparkle wait to give better information * Fixing table to change layout once finished * Fixing platform bug where changing dir does not happen on time when executing commands in subdir * Various fixes based on tutorial * Adding documentation for venv * updating logging pytest * Updating Venv installation manual * Adding CLI cores option to SMAC2 * flake8 * Bugfix settings * Bugfixes regarding overscheduling of jobs, adding better names to configuration jobs
* environment yml fix * Adding in autocompletion to the CLI functionalities * Adding readme * Changelog * Better names * Renamiong file * updating install msg * Script bugfixes * Updating solution verifier argument docs * Changelog fix * flake8 * bugfixes * various cli bugfixes for autocomplete * Adding sparkle autocomplete to bash profile for installation * Updating documentation
* Updating sparkle cancel command to have all functionalities from sparkle wait * Adding comments * Minor bug fixes and performance updates * Renaming cancel command to jobs, adapting CLI args accordingly * Deleting wait command as it is now handled by the jobs command, updating docs accordingly * Changelog mistake
* Release/0.9.1.2 (#126) * Sprk 361 - Merging run configured solver into run solvers (#123) * Updating run solvers to start a job per solver instead of per instance/run combination * Merging run_configured_solver into run_solvers * updating file names to be more clear, adding place holder test for run solvers * Test fix * Fixing specific configuration running * Update changelog * Bugfixes for selection example * Removing Validation directory from Platform * Reference_List moving into Settings directory * Bugfixes for snapshots * Adding sparkle citation * CLI execution rights fix * Release/0.9.1.1 (#125) * Pathing typos * Updating changelog * Adding init to core module * Patchfix * New distributable * Changelog update, version change, shell script updates * New release tarball * Attempted bug fixes for Github pipeline
* Updating FastVC2+p wrapper * updating MinVC solver wrapper * Update tutorial
…into development
* adding flushing to jobs table (spacebar) * Changelog
* Print enum value * Add postfix to solvers params * Fixup * Update postfix in docstring * Add type for postfix * fixup * flake8 fixes --------- Co-authored-by: Thijs Snelleman <[email protected]>
* Add matrix testing for unittest * Update changelog * Updating unittest run condition * Formatting --------- Co-authored-by: Thijs Snelleman <[email protected]>
* Updating configure solver to add new runs as 'empty' configurations * Bugfix reporting scenario * Adding check to report generation * Performance dataframe bugfix
* Removing AutoFolio from Sparkle * Removing autofolio pt 2 * Adding pypi publish action for github * intermittent check in * updating asf lib version * Patching data conversion and prediction to new style * Fixing construction process of selectors * ASF total fix * New asflib version * Naming bugfix * PairwiseClassifier replacement * Docs update * Re-adding smac3 to the setup * typo * xgboost requirement * Making hadar happy
* First ParamILS * Fixes and preps * Updating configurators to latest version of Sparkle * Adding ParamILS 2016 version to Sparkle * Adding execution rights * Removing validation scripts as sparkle validates internally * Replacing smac jar for bugfixes (?) * Updating ParamILS class * Prepping paramils settings * Adding paramils specific settings to sparkle * Adding paramils parameters to the correct dict * Updates to scenario setting files * Update to sparkle settings * Updating docstring * Import bugfix * Bugfixes for ParamILS * Adding pytest for paramils * Parsing + PCS bugfixes for ParamILS * Target algorithm bugfixes, Parameter space conversion bugfixes * Updating paramils output parsing * Updating ParamILS settings handling * Settings bugfixes for ParamILS * Fixing report generation for ParamILS * Updating report text * Removing number of runs from Unit tests as it is directory dependent * Updating sparkle documentation for ParamILS * paramils scenario test fixes --------- Co-authored-by: Thijs Snelleman <[email protected]>
* Enhance performance data handling and reporting in configuration output - Added checks for missing performance data in generate_report.py. - Updated ConfigurationOutput class to track performance data availability and reasons. - Improved error handling in PerformanceDataFrame for missing measurements. - Introduced parsing for unquoted IRACE categorical values in PCSConverter. - Added tests for unquoted categorical values and enhanced test coverage. * Improve objective resolution in Settings class with error handling for invalid values * Add parsing for objectives in Settings class to handle list-like strings * Fix instance name extraction in IterableFileInstanceSet to use stem instead of name * Refactor comparison_plot to handle log scale determination with valid data check * Fix instance name extraction in IterableFileInstanceSet and enhance Selector metadata handling * Enhance metadata handling in Selector and improve performance data processing * Improve comments for clarity in Settings, Selector, and PCSConverter classes * Add fallback ScenarioMetadata dataclass for compatibility in Selector * Refactor selector instantiation to handle varying ASF constructor signatures * Ensure selector has a usable model_class for ASF CLI build * Removing metadata handling from selector, deleting performance_data_missing logic, bring settings_object to base version * Refactor portfolio selector commands for consistency in configuration_selection.sh and streamline categorical value parsing in PCSConverter * adding comments to comparison_plot function * Add comprehensive tests for recursive_conversion in configspace utilities * Add tests for tuple handling and forbidden relations in configspace utilities * Update CHANGELOG.md for Bug#206: Add new features and fixes related to configuration-space parsing and performance data cleaning
…into development
* bugfixes for extractor * add shell version of extractor wrapper for speed up * add shell version of extractor wrapper for speed up * fixing featuredata cleanup * various bug fixes and qol updates * Making selector cli more stable with append write * wrapper fix and logging update * extra check + message for constructing portfolio * remove print * snapshot bugfixes * snapshot bugfix * testfix * pdf append writing improvement * changelog update
* extractor cli job naming bugfix * adding new arguments to compute features * test fix * cl update * Removing colons from file names to avoid errors on other systems * test fix * disabling test for github
* enabling append writing for extractor CLI, transposing dataframe axes * fixing selector to work with new featuredataframe format * update filtering doubles from fdf * update extractor adding/removal * adding extractor error message * update extractor regex and error message * updating print statements * extractor wrapper bugfix * extractor wrapper example update * updating snapshots and examples * bug fix running portfolio selector * testfix * test fixes and changelog udpate
* Enhance run method with error handling and timeout management * changelog update * testing the old version again * minor change * applying new changes to extractor.run * testing to fix integration test test_construct_portfolio_selector * Add tests for Extractor.run method to validate output and error handling * Skip tests for 'kathleen' cluster in generate report, portfolio selector ando ablation due to GitHub Actions issues * Adding comments * Refactor tests to use MagicMock for LocalRun and LocalJob in test_run_returns_parsed_output and test_run_raises_on_error_status
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