Modify the cmake to make it install package automatically.

Author: Aaron-Hsieh-0129

CMakeLists.txt

@@ -85,59 +85,85 @@ include_directories(
 )
 
 # ExternalProject for HDF5
-ExternalProject_Add(
-    hdf5_ext
-    URL https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.1/src/hdf5-1.10.1.tar.gz
-    PREFIX ${CMAKE_SOURCE_DIR}/_deps/hdf5
-    CONFIGURE_COMMAND <SOURCE_DIR>/configure --prefix=${DEP_INSTALL_DIR} --enable-cxx --enable-fortran --enable-shared --with-pic CC=${CMAKE_C_COMPILER} CXX=${CMAKE_CXX_COMPILER} FC=${CMAKE_Fortran_COMPILER}
-    BUILD_COMMAND make -j${N_CORES}
-    INSTALL_COMMAND make install
-    UPDATE_COMMAND ""
-    BUILD_ALWAYS FALSE
-    DOWNLOAD_EXTRACT_TIMESTAMP TRUE
-)
+find_library(HDF5_LIB NAMES hdf5 hdf5_serial HINTS ${DEP_INSTALL_DIR}/lib NO_DEFAULT_PATH)
+find_library(HDF5_HL_LIB NAMES hdf5_hl HINTS ${DEP_INSTALL_DIR}/lib NO_DEFAULT_PATH)
+if(NOT HDF5_LIB OR NOT HDF5_HL_LIB)
+    ExternalProject_Add(
+        hdf5_ext
+        URL https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.1/src/hdf5-1.10.1.tar.gz
+        PREFIX ${CMAKE_SOURCE_DIR}/_deps/hdf5
+        CONFIGURE_COMMAND <SOURCE_DIR>/configure --prefix=${DEP_INSTALL_DIR} --enable-cxx --enable-fortran --enable-shared --with-pic CC=${CMAKE_C_COMPILER} CXX=${CMAKE_CXX_COMPILER} FC=${CMAKE_Fortran_COMPILER}
+        BUILD_COMMAND make -j${N_CORES}
+        INSTALL_COMMAND make install
+        UPDATE_COMMAND ""
+        BUILD_ALWAYS FALSE
+        DOWNLOAD_EXTRACT_TIMESTAMP TRUE
+    )
+else()
+    message(STATUS "HDF5 found: ${HDF5_LIB}")
+    message(STATUS "HDF5 high-level library found: ${HDF5_HL_LIB}")
+endif()
 
 # ExternalProject for NetCDF-C (depends on HDF5)
-ExternalProject_Add(
-    netcdf-c_ext
-    URL https://github.com/Unidata/netcdf-c/archive/v4.3.3.1.tar.gz
-    PREFIX ${CMAKE_SOURCE_DIR}/_deps/netcdf-c
-    CONFIGURE_COMMAND <SOURCE_DIR>/configure --prefix=${DEP_INSTALL_DIR} --enable-netcdf-4 --enable-shared --with-pic --disable-dap CC=${CMAKE_C_COMPILER} CXX=${CMAKE_CXX_COMPILER} FC=${CMAKE_Fortran_COMPILER} CPPFLAGS=-I${DEP_INSTALL_DIR}/include LDFLAGS=-L${DEP_INSTALL_DIR}/lib
-    BUILD_COMMAND make -j${N_CORES}
-    INSTALL_COMMAND make install
-    UPDATE_COMMAND ""
-    BUILD_ALWAYS FALSE
-    DEPENDS hdf5_ext
-    DOWNLOAD_EXTRACT_TIMESTAMP TRUE
-)
+find_library(NETCDF_LIB NAMES netcdf HINTS ${DEP_INSTALL_DIR}/lib NO_DEFAULT_PATH)
+if(NOT NETCDF_LIB)
+    ExternalProject_Add(
+        netcdf-c_ext
+        URL https://github.com/Unidata/netcdf-c/archive/v4.3.3.1.tar.gz
+        PREFIX ${CMAKE_SOURCE_DIR}/_deps/netcdf-c
+        CONFIGURE_COMMAND <SOURCE_DIR>/configure --prefix=${DEP_INSTALL_DIR} --enable-netcdf-4 --enable-shared --with-pic --disable-dap CC=${CMAKE_C_COMPILER} CXX=${CMAKE_CXX_COMPILER} FC=${CMAKE_Fortran_COMPILER} CPPFLAGS=-I${DEP_INSTALL_DIR}/include LDFLAGS=-L${DEP_INSTALL_DIR}/lib
+        BUILD_COMMAND make -j${N_CORES}
+        INSTALL_COMMAND make install
+        UPDATE_COMMAND ""
+        BUILD_ALWAYS FALSE
+        DEPENDS hdf5_ext
+        DOWNLOAD_EXTRACT_TIMESTAMP TRUE
+    )
+else()
+    message(STATUS "NetCDF-C found in ${DEP_INSTALL_DIR}/lib")
+endif()
 
 # ExternalProject for NetCDF-CXX (depends on NetCDF-C)
-ExternalProject_Add(
-    netcdf-cxx4_ext
-    URL https://github.com/Unidata/netcdf-cxx4/archive/v4.3.0.tar.gz
-    PREFIX ${CMAKE_SOURCE_DIR}/_deps/netcdf-cxx4
-    CONFIGURE_COMMAND <SOURCE_DIR>/configure --prefix=${DEP_INSTALL_DIR} --enable-shared --with-pic CC=${CMAKE_C_COMPILER} CXX=${CMAKE_CXX_COMPILER} CPPFLAGS=-I${DEP_INSTALL_DIR}/include LDFLAGS=-L${DEP_INSTALL_DIR}/lib
-    BUILD_COMMAND make -j${N_CORES}
-    INSTALL_COMMAND make install
-    UPDATE_COMMAND ""
-    BUILD_ALWAYS FALSE
-    DEPENDS netcdf-c_ext
-    DOWNLOAD_EXTRACT_TIMESTAMP TRUE
-)
+find_library(NETCDF_CXX_LIB NAMES netcdf_c++4 HINTS ${DEP_INSTALL_DIR}/lib NO_DEFAULT_PATH)
+if(NOT NETCDF_CXX_LIB)
+    ExternalProject_Add(
+        netcdf-cxx4_ext
+        URL https://github.com/Unidata/netcdf-cxx4/archive/v4.3.0.tar.gz
+        PREFIX ${CMAKE_SOURCE_DIR}/_deps/netcdf-cxx4
+        CONFIGURE_COMMAND <SOURCE_DIR>/configure --prefix=${DEP_INSTALL_DIR} --enable-shared --with-pic CC=${CMAKE_C_COMPILER} CXX=${CMAKE_CXX_COMPILER} CPPFLAGS=-I${DEP_INSTALL_DIR}/include LDFLAGS=-L${DEP_INSTALL_DIR}/lib
+        BUILD_COMMAND make -j${N_CORES}
+        INSTALL_COMMAND make install
+        UPDATE_COMMAND ""
+        BUILD_ALWAYS FALSE
+        DEPENDS netcdf-c_ext
+        DOWNLOAD_EXTRACT_TIMESTAMP TRUE
+    )
+else()
+    message(STATUS "NetCDF-C++ found in ${DEP_INSTALL_DIR}/lib")
+endif()
+
 
 # ExternalProject for Boost
-ExternalProject_Add(
-    boost_ext
-    URL https://archives.boost.io/release/1.87.0/source/boost_1_87_0.tar.gz
-    PREFIX ${CMAKE_SOURCE_DIR}/_deps/boost
-    CONFIGURE_COMMAND <SOURCE_DIR>/bootstrap.sh --prefix=${DEP_INSTALL_DIR}
-    BUILD_COMMAND <SOURCE_DIR>/b2 -j${BOOST_BUILD_CORES} install --prefix=${DEP_INSTALL_DIR}
-    BUILD_IN_SOURCE TRUE
-    INSTALL_COMMAND ""
-    UPDATE_COMMAND ""
-    BUILD_ALWAYS FALSE
-    DOWNLOAD_EXTRACT_TIMESTAMP TRUE
-)
+find_library(BOOST_SYSTEM_LIB NAMES boost_system HINTS ${DEP_INSTALL_DIR}/lib NO_DEFAULT_PATH)
+find_library(BOOST_FILESYSTEM_LIB NAMES boost_filesystem HINTS ${DEP_INSTALL_DIR}/lib NO_DEFAULT_PATH)
+if(NOT BOOST_SYSTEM_LIB OR NOT BOOST_FILESYSTEM_LIB)
+    ExternalProject_Add(
+        boost_ext
+        URL https://archives.boost.io/release/1.87.0/source/boost_1_87_0.tar.gz
+        PREFIX ${CMAKE_SOURCE_DIR}/_deps/boost
+        CONFIGURE_COMMAND <SOURCE_DIR>/bootstrap.sh --prefix=${DEP_INSTALL_DIR}
+        BUILD_COMMAND <SOURCE_DIR>/b2 -j${BOOST_BUILD_CORES} install --prefix=${DEP_INSTALL_DIR}
+        BUILD_IN_SOURCE TRUE
+        INSTALL_COMMAND ""
+        UPDATE_COMMAND ""
+        BUILD_ALWAYS FALSE
+        DOWNLOAD_EXTRACT_TIMESTAMP TRUE
+    )
+else()
+    message(STATUS "Boost found in ${DEP_INSTALL_DIR}/lib")
+    set(Boost_INCLUDE_DIRS ${DEP_INSTALL_DIR}/include)
+    set(Boost_LIBRARIES ${BOOST_SYSTEM_LIB} ${BOOST_FILESYSTEM_LIB})
+endif()
 
 # Add rte-rrtmgp-cpp as a subdirectory
 add_subdirectory(external/rte-rrtmgp-cpp)
@@ -190,7 +216,7 @@ target_link_libraries(vvm2d PRIVATE
 )
 
 # Add dependencies
-add_dependencies(vvm2d hdf5_ext netcdf-c_ext netcdf-cxx4_ext boost_ext)
+# add_dependencies(vvm2d hdf5_ext netcdf-c_ext netcdf-cxx4_ext boost_ext)
 
 # Set runtime library paths (-rpath)
 set_target_properties(vvm2d PROPERTIES

external/rte-rrtmgp-cpp/.gitmodules

@@ -16,12 +16,12 @@ set(USER_FC_FLAGS "-std=f2003 -fdefault-real-8 -fdefault-double-8 -fPIC -ffixed-
 set(USER_FC_FLAGS_RELEASE "-O3 -DNDEBUG -march=native")
 set(USER_FC_FLAGS_DEBUG "-O0 -g -Wall -Wno-unknown-pragmas")
 
-set(NETCDF_INCLUDE_DIR "/home/Aaron/local/inlcude")
-set(NETCDF_LIB_C       "/home/Aaron/local/lib/libnetcdf.so")
-set(HDF5_LIB_1         "/home/Aaron/local/lib/libhdf5.so")
-set(HDF5_LIB_2         "/home/Aaron/local/lib/libhdf5_hl.so")
-
-set(LIBS ${NETCDF_LIB_C} ${HDF5_LIB_2} ${HDF5_LIB_1} m z curl)
+# set(NETCDF_INCLUDE_DIR "/home/Aaron/local/inlcude")
+# set(NETCDF_LIB_C       "/home/Aaron/local/lib/libnetcdf.so")
+# set(HDF5_LIB_1         "/home/Aaron/local/lib/libhdf5.so")
+# set(HDF5_LIB_2         "/home/Aaron/local/lib/libhdf5_hl.so")
+#
+# set(LIBS ${NETCDF_LIB_C} ${HDF5_LIB_2} ${HDF5_LIB_1} m z curl)
 set(INCLUDE_DIRS ${FFTW_INCLUDE_DIR} ${NETCDF_INCLUDE_DIR})
 
 add_definitions(-DRESTRICTKEYWORD=__restrict__)

external/rte-rrtmgp-cpp/config/default.cmake

@@ -0,0 +1 @@
+.DS_Store

external/rte-rrtmgp-cpp/rrtmgp-data

@@ -0,0 +1,39 @@
+cff-version: 1.2.0
+title: "RRTMGP data"
+authors:
+  - family-names: Pincus
+    given-names: Robert
+    orcid: "https://orcid.org/0000-0002-0016-3470"
+  - family-names: Mlawer
+    given-names: Eli J. 
+    orcid: "https://orcid.org/0000-0001-7962-4307"
+  - family-names: Delamere
+    given-names: Jennifer 
+    orcid: "https://orcid.org/0000-0001-5074-6458"
+  - family-names: Iacono
+    given-names: Michael J. 
+    orcid: "https://orcid.org/0000-0002-9578-0649"
+  - family-names: Pernak
+    given-names: Rick
+    orcid: "https://orcid.org/0000-0002-3624-2314"
+type: dataset
+date-released: "2023-05-30"
+abstract: "Data for RRTMGP gas, cloud, and aersol optics; inputs and reference results for examples distributed in RTE+RRTMGP"
+identifiers:
+  - description: "All versions"
+    type: doi
+    value: 10.5281/zenodo.7988260
+  - description: "Version 1.7"
+    type: doi
+    value: 10.5281/zenodo.7988261
+keywords:
+  - netCDF
+  - "RTE+RRTMGP"
+  - "atmospheric radiation"
+  - "radiative transfer"
+  - "climate model"
+  - research
+license: BSD-3-Clause
+message: "If you use this software, please cite it using these metadata."
+repository-code: "https://github.com/earth-system-radiaton/rrtmgp-data"
+version: 1.7

external/rte-rrtmgp-cpp/rrtmgp-data/.gitignore

@@ -0,0 +1,29 @@
+BSD 3-Clause License
+
+Copyright (c) 2015-2018, Atmospheric and Environmental Research and Regents of the University of Colorado.
+All rights reserved.
+
+Redistribution and use in source and binary forms, with or without
+modification, are permitted provided that the following conditions are met:
+
+* Redistributions of source code must retain the above copyright notice, this
+  list of conditions and the following disclaimer.
+
+* Redistributions in binary form must reproduce the above copyright notice,
+  this list of conditions and the following disclaimer in the documentation
+  and/or other materials provided with the distribution.
+
+* Neither the name of the copyright holder nor the names of its
+  contributors may be used to endorse or promote products derived from
+  this software without specific prior written permission.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
+DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
+FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
+DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
+SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
+CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
+OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
+OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

external/rte-rrtmgp-cpp/rrtmgp-data/CITATION.cff

@@ -0,0 +1,18 @@
+# About RRTMGP data
+
+[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.7988260.svg)](https://doi.org/10.5281/zenodo.7988260)
+
+This directory contains data for use with the 
+[RRTMGP k-distribution](https://github.com/earth-system-radiation/rte-rrtmgp) for computing 
+absorption and scattering by gases in the the earth's atmosphere, as well an example implementation
+of cloud optics and an implementation of aerosol optics following the MERRA aerosol description. 
+
+The data have been copied and renamed from the 
+[RRTMGP repository](https://github.com/earth-system-radiation/rte-rrtmgp)
+at commit 74a0e09. 
+
+Data used by the gas optics, cloud optics, and aerosol optics schemes are in the root 
+directory. 
+
+RTE+RRTMGP is distributed with some examples which are used to test implementations. 
+The inputs and reference outputs for the current data are provided in `examples/`