🧬 MoleculeX

AI-Powered Pharmaceutical Intelligence Platform

Revolutionizing drug development with multi-agent AI orchestration

Demo • Features • Installation • Usage • Architecture

📋 Overview

MoleculeX is an advanced pharmaceutical intelligence platform that leverages Google's Gemini AI and a multi-agent orchestration system to provide comprehensive market analysis, patent intelligence, clinical trial tracking, and competitive insights for drug development.

🎯 Problem Statement

Pharmaceutical companies need to analyze vast amounts of data across multiple domains (market trends, patents, clinical trials, trade data) to make informed strategic decisions. Traditional research methods are:

⏱️ Time-consuming and labor-intensive
💰 Expensive requiring multiple specialized analysts
🔍 Often incomplete or siloed across departments
📊 Difficult to synthesize into actionable insights

💡 Solution

MoleculeX automates pharmaceutical intelligence gathering using specialized AI agents that work in parallel to:

Analyze market size, CAGR, and competitive landscapes
Track patent portfolios and identify IP opportunities
Monitor clinical trial pipelines across therapeutic areas
Evaluate import/export trends and trade patterns
Generate strategic SWOT analysis and opportunity scores

✨ Features

🤖 Multi-Agent AI System

Master Agent: Orchestrates the entire intelligence gathering workflow
Market Agent: Analyzes market size, growth rates, and key competitors
Patent Agent: Tracks patent portfolios, expiry dates, and IP landscapes
Clinical Trials Agent: Monitors ongoing trials, phases, sponsors, and enrollment
EXIM Agent: Evaluates import/export volumes and trade patterns
Web Agent: Gathers competitive intelligence and industry insights
Report Agent: Synthesizes all data into structured intelligence reports

📊 Advanced Analytics

Interactive Dashboards: Real-time data visualization with Recharts
Market Growth Projections: Historical and forecasted market trends
Patent Timeline Visualization: Track patent expiries and opportunities
Clinical Trial Phase Distribution: Donut charts showing trial pipeline
Competitive Landscape Matrix: 2x2 grid mapping market share vs innovation
SWOT Analysis: Strategic strengths, weaknesses, opportunities, and threats

🎨 Modern UI/UX

Dark/Light Mode: Seamless theme switching with smooth transitions
Responsive Design: Works flawlessly on desktop, tablet, and mobile
Real-time Agent Status: Live monitoring of AI agent progress
Beautiful Landing Page: Professional onboarding experience
Interactive Charts: Hover effects, tooltips, and drill-down capabilities

🔐 Smart API Management

Quota Limit Handling: Automatic detection of API quota exhaustion
On-the-Fly API Key Switching: Enter new keys without restarting
Graceful Error Recovery: Continue processing with alternative credentials
Secure Key Storage: Environment-based configuration

📄 Export & Reporting

PDF Generation: Professional reports with tables and analysis
Structured JSON Export: Programmatic access to all intelligence data
Source Attribution: Traceable references for all findings

🚀 Installation

Prerequisites

Node.js (v18 or higher)
npm or yarn
Gemini API Key (Get one here)

Setup Steps

Clone the repository

git clone https://github.com/Abhishekmishra2808/molecule.git
cd molecule

Install dependencies
```
npm install
```
Configure environment variables

Create a .env.local file in the root directory:
```
GEMINI_API_KEY=your_gemini_api_key_here
```
Start the development server
```
npm run dev
```
Open your browser

Navigate to http://localhost:3000

💻 Usage

Basic Workflow

Landing Page: Click "Get Started" to enter the application
Research Setup:
- Enter your research question (e.g., "What are the emerging opportunities in cardiovascular drug development in Asia?")
- Select region (Asia, USA, Europe, Global, India)
- Optionally specify a molecule name
- Enable/disable PDF report generation
Run Orchestration: Click the button to start AI analysis
Monitor Progress: Watch agents execute in real-time
View Results: Explore insights across Market, Clinical, IP, EXIM, and Strategy tabs
Download Report: Export comprehensive PDF analysis

Handling Quota Limits

If you encounter a Gemini API quota limit:

A modal will automatically appear
Enter a new API key from Google AI Studio
Click "Retry with New Key"
Processing continues seamlessly

Sample Queries

What are the emerging opportunities in cardiovascular drug development in Asia?
Analyze the biosimilar landscape for oncology drugs in Europe
What is the patent cliff risk for diabetes medications in the USA?
Evaluate clinical trial activity for mRNA vaccines globally

🏗️ Architecture

Tech Stack

Frontend

React 19 with TypeScript
Vite for blazing-fast builds
Tailwind CSS for styling
Lucide React for icons
Recharts for data visualization

AI & Backend

Google Gemini 2.5 Flash (via @google/genai)
Multi-agent orchestration system
Real-time status polling
Sequential agent execution with fault tolerance

Export & Reporting

jsPDF for PDF generation
jsPDF-AutoTable for structured tables
JSON structured output

Project Structure

molecule/
├── components/
│   ├── AgentPanel.tsx       # Agent status monitoring
│   ├── Charts.tsx            # Data visualization components
│   ├── ChatPanel.tsx         # System logs display
│   ├── LandingPage.tsx       # Welcome screen
│   └── ResultCards.tsx       # Intelligence cards & SWOT
├── services/
│   └── api.ts                # Gemini API integration & orchestration
├── App.tsx                   # Main application component
├── types.ts                  # TypeScript interfaces
├── index.tsx                 # Application entry point
├── package.json              # Dependencies
├── vite.config.ts            # Build configuration
└── .env.local                # Environment variables (not in git)

Multi-Agent Orchestration Flow

graph TD
    A[User Query] --> B[Master Agent]
    B --> C[Market Agent]
    B --> D[Patent Agent]
    B --> E[Trials Agent]
    B --> F[EXIM Agent]
    B --> G[Web Agent]
    C --> H[Report Agent]
    D --> H
    E --> H
    F --> H
    G --> H
    H --> I[Structured Result]
    I --> J[UI Dashboard]
    I --> K[PDF Export]

🎨 Screenshots

Landing Page

Beautiful, professional landing page with smooth animations and gradient effects.

Main Dashboard

Real-time agent monitoring, research setup panel, and comprehensive data tabs.

Market Analysis

Interactive bar charts showing market growth projections with key metrics cards.

Clinical Trials

Donut chart visualization of trial phases with detailed trial listings.

Patent Timeline

Horizontal bar chart showing patent expiries with remaining years indicators.

Competitive Landscape

Scatter plot matrix mapping competitors by market share and innovation scores.

🔧 Configuration

Environment Variables

Variable	Description	Required
`GEMINI_API_KEY`	Your Google Gemini API key	Yes

Customization

Theme Colors: Modify tailwind.config.js (if present) or CSS variables in index.css

AI Models: Update model names in services/api.ts:

const modelSearch = 'gemini-2.5-flash';
const modelReasoning = 'gemini-2.5-flash';

Delay Between API Calls: Adjust in services/api.ts:

const SAFE_DELAY_MS = 15000; // 15 seconds

🐛 Troubleshooting

Common Issues

Issue: "Quota limit exceeded" error

Solution: Use the API key modal to enter a new Gemini API key

Issue: Charts not rendering properly

Solution: Ensure all data fields are populated; check browser console for errors

Issue: Build fails with TypeScript errors

Solution: Run npm install to ensure all type definitions are installed

Issue: Vite server won't start

Solution: Check if port 3000 is available or change port in vite.config.ts

🚢 Deployment

Build for Production

npm run build

This creates an optimized production build in the dist/ folder.

Deploy to Vercel

# Install Vercel CLI
npm i -g vercel

# Deploy
vercel

Deploy to Netlify

Connect your GitHub repository to Netlify
Set build command: npm run build
Set publish directory: dist
Add environment variable: GEMINI_API_KEY

🤝 Contributing

Contributions are welcome! Please follow these steps:

Fork the repository
Create a feature branch (git checkout -b feature/AmazingFeature)
Commit your changes (git commit -m 'Add some AmazingFeature')
Push to the branch (git push origin feature/AmazingFeature)
Open a Pull Request

📄 License

This project is licensed under the MIT License - see the LICENSE file for details.

👨‍💻 Author

Abhishek Mishra

GitHub: @Abhishekmishra2808
LinkedIn: Connect with me

🙏 Acknowledgments

Google Gemini for powerful AI capabilities
Recharts for beautiful chart components
Lucide for clean, consistent icons
Tailwind CSS for utility-first styling
The pharmaceutical research community for inspiration

📊 Project Status

Current Version: 2.5.0
Status: ✅ Active Development
Last Updated: December 2025

Roadmap

Add real-time web search integration
Implement user authentication and saved queries
Add comparison mode for multiple molecules
Integrate with additional data sources (FDA, EMA)
Add collaborative features for team research
Implement API rate limiting dashboard
Add export to Excel/CSV functionality

⭐ Star this repo if you find it helpful!

Made with ❤️ for the pharmaceutical research community

Report Bug • Request Feature

Name		Name	Last commit message	Last commit date
Latest commit History 4 Commits
components		components
services		services
utils		utils
.gitignore		.gitignore
App.tsx		App.tsx
README.md		README.md
index.html		index.html
index.tsx		index.tsx
metadata.json		metadata.json
package-lock.json		package-lock.json
package.json		package.json
tsconfig.json		tsconfig.json
types.ts		types.ts
vite.config.ts		vite.config.ts

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