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Fasta.cpp
Fasta.cpp
 
 
Fasta.h
Fasta.h
 
 
Fasta.o
Fasta.o
 
 
LargeFileSupport.h
LargeFileSupport.h
 
 
Makefile
Makefile
 
 
Mosaik.h
Mosaik.h
 
 
SmithWatermanGotoh.cpp
SmithWatermanGotoh.cpp
 
 
SmithWatermanGotoh.h
SmithWatermanGotoh.h
 
 
SmithWatermanGotoh.o
SmithWatermanGotoh.o
 
 
bed.cpp
bed.cpp
 
 
bed.h
bed.h
 
 
bed.o
bed.o
 
 
bedStructure.cpp
bedStructure.cpp
 
 
bedStructure.h
bedStructure.h
 
 
bedStructure.o
bedStructure.o
 
 
fasta_reference.cpp
fasta_reference.cpp
 
 
fasta_reference.h
fasta_reference.h
 
 
genotype_info.cpp
genotype_info.cpp
 
 
genotype_info.h
genotype_info.h
 
 
header.cpp
header.cpp
 
 
header.h
header.h
 
 
info.cpp
info.cpp
 
 
info.h
info.h
 
 
info.o
info.o
 
 
intersect.cpp
intersect.cpp
 
 
intersect.cpp~
intersect.cpp~
 
 
intersect.h
intersect.h
 
 
intersect.o
intersect.o
 
 
modify_alleles.cpp
modify_alleles.cpp
 
 
modify_alleles.h
modify_alleles.h
 
 
output.cpp
output.cpp
 
 
output.h
output.h
 
 
samples.cpp
samples.cpp
 
 
samples.h
samples.h
 
 
samples.o
samples.o
 
 
split.cpp
split.cpp
 
 
split.h
split.h
 
 
split.o
split.o
 
 
stats.cpp
stats.cpp
 
 
stats.h
stats.h
 
 
stats.o
stats.o
 
 
structures.h
structures.h
 
 
symbolic_alternates.cpp
symbolic_alternates.cpp
 
 
symbolic_alternates.h
symbolic_alternates.h
 
 
temp.cpp
temp.cpp
 
 
tool_annotate.cpp
tool_annotate.cpp
 
 
tool_annotate.h
tool_annotate.h
 
 
tool_annotate.o
tool_annotate.o
 
 
tool_distributions.cpp
tool_distributions.cpp
 
 
tool_distributions.h
tool_distributions.h
 
 
tool_distributions.o
tool_distributions.o
 
 
tool_filter.cpp
tool_filter.cpp
 
 
tool_filter.h
tool_filter.h
 
 
tool_filter.o
tool_filter.o
 
 
tool_intersect.cpp
tool_intersect.cpp
 
 
tool_intersect.cpp.bk
tool_intersect.cpp.bk
 
 
tool_intersect.h
tool_intersect.h
 
 
tool_intersect.o
tool_intersect.o
 
 
tool_merge.cpp
tool_merge.cpp
 
 
tool_merge.h
tool_merge.h
 
 
tool_merge.o
tool_merge.o
 
 
tool_stats.cpp
tool_stats.cpp
 
 
tool_stats.h
tool_stats.h
 
 
tool_stats.o
tool_stats.o
 
 
tool_temp.cpp
tool_temp.cpp
 
 
tool_temp.h
tool_temp.h
 
 
tool_validate.cpp
tool_validate.cpp
 
 
tool_validate.h
tool_validate.h
 
 
tool_validate.o
tool_validate.o
 
 
tools.cpp
tools.cpp
 
 
tools.h
tools.h
 
 
tools.o
tools.o
 
 
trim_alleles.o
trim_alleles.o
 
 
variant.cpp
variant.cpp
 
 
variant.h
variant.h
 
 
variant.o
variant.o
 
 
vcf.cpp
vcf.cpp
 
 
vcf.h
vcf.h
 
 
vcf.o
vcf.o
 
 
vcfCTools.cpp
vcfCTools.cpp
 
 
vcfCTools_tool.h
vcfCTools_tool.h
 
 
vcfCTools_version.h
vcfCTools_version.h
 
 
vcf_aux.cpp
vcf_aux.cpp
 
 
vcf_aux.h
vcf_aux.h
 
 
vcf_aux.o
vcf_aux.o
 
 

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C++ implementation of vcfPytools. The layout of the code is based on bamtools by Derek Barnett.

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