GitHub - AlistairNWard/vcfCTools: C++ implementation of vcfPytools. The layout of the code is based on bamtools by Derek Barnett.

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 59 Commits
Fasta.cpp		Fasta.cpp
Fasta.h		Fasta.h
Fasta.o		Fasta.o
LargeFileSupport.h		LargeFileSupport.h
Makefile		Makefile
Mosaik.h		Mosaik.h
SmithWatermanGotoh.cpp		SmithWatermanGotoh.cpp
SmithWatermanGotoh.h		SmithWatermanGotoh.h
SmithWatermanGotoh.o		SmithWatermanGotoh.o
bed.cpp		bed.cpp
bed.h		bed.h
bed.o		bed.o
bedStructure.cpp		bedStructure.cpp
bedStructure.h		bedStructure.h
bedStructure.o		bedStructure.o
fasta_reference.cpp		fasta_reference.cpp
fasta_reference.h		fasta_reference.h
genotype_info.cpp		genotype_info.cpp
genotype_info.h		genotype_info.h
header.cpp		header.cpp
header.h		header.h
info.cpp		info.cpp
info.h		info.h
info.o		info.o
intersect.cpp		intersect.cpp
intersect.cpp~		intersect.cpp~
intersect.h		intersect.h
intersect.o		intersect.o
modify_alleles.cpp		modify_alleles.cpp
modify_alleles.h		modify_alleles.h
output.cpp		output.cpp
output.h		output.h
samples.cpp		samples.cpp
samples.h		samples.h
samples.o		samples.o
split.cpp		split.cpp
split.h		split.h
split.o		split.o
stats.cpp		stats.cpp
stats.h		stats.h
stats.o		stats.o
structures.h		structures.h
symbolic_alternates.cpp		symbolic_alternates.cpp
symbolic_alternates.h		symbolic_alternates.h
temp.cpp		temp.cpp
tool_annotate.cpp		tool_annotate.cpp
tool_annotate.h		tool_annotate.h
tool_annotate.o		tool_annotate.o
tool_distributions.cpp		tool_distributions.cpp
tool_distributions.h		tool_distributions.h
tool_distributions.o		tool_distributions.o
tool_filter.cpp		tool_filter.cpp
tool_filter.h		tool_filter.h
tool_filter.o		tool_filter.o
tool_intersect.cpp		tool_intersect.cpp
tool_intersect.cpp.bk		tool_intersect.cpp.bk
tool_intersect.h		tool_intersect.h
tool_intersect.o		tool_intersect.o
tool_merge.cpp		tool_merge.cpp
tool_merge.h		tool_merge.h
tool_merge.o		tool_merge.o
tool_stats.cpp		tool_stats.cpp
tool_stats.h		tool_stats.h
tool_stats.o		tool_stats.o
tool_temp.cpp		tool_temp.cpp
tool_temp.h		tool_temp.h
tool_validate.cpp		tool_validate.cpp
tool_validate.h		tool_validate.h
tool_validate.o		tool_validate.o
tools.cpp		tools.cpp
tools.h		tools.h
tools.o		tools.o
trim_alleles.o		trim_alleles.o
variant.cpp		variant.cpp
variant.h		variant.h
variant.o		variant.o
vcf.cpp		vcf.cpp
vcf.h		vcf.h
vcf.o		vcf.o
vcfCTools.cpp		vcfCTools.cpp
vcfCTools_tool.h		vcfCTools_tool.h
vcfCTools_version.h		vcfCTools_version.h
vcf_aux.cpp		vcf_aux.cpp
vcf_aux.h		vcf_aux.h
vcf_aux.o		vcf_aux.o