asap-modules/pyproject.toml at main · AllenInstitute/asap-modules · GitHub

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[project]
name = "asap"
requires-python = ">3.8,<3.12"
dynamic = ["version"]
dependencies = [
    "render-python>=2.3.1",
    "marshmallow",
    "argschema",
    "numpy",
    "pillow",
    "tifffile",
    "pathlib2",
    "scipy",
    "rtree",
    "networkx",
    "bokeh",
    "bigfeta",
    "opencv-contrib-python-headless",
    "em_stitch",
    "matplotlib",
    # "jinja2<3.1",
    "six",
    "scikit-image",
    "shapely",
    "triangle",
    "uri_handler",
    "imageio",
    "seaborn",
    "mpld3",
    "descartes",
    "lxml",
    "pymongo==3.11.1",
    "igraph"
]

[project.optional-dependencies]
test = [
    "coverage>=4.1",
    "mock>=2.0.0",
    "pep8>=1.7.0",
    "pytest>=3.0.5",
    "pytest-cov>=2.2.1",
    "pytest-pep8>=1.0.6",
    "pytest-xdist>=1.14",
    "flake8>=3.0.4",
    "pylint>=1.5.4",
    "codecov",
    # "jinja2",
]

[build-system]
requires = ["setuptools>=64", "setuptools_scm>=8"]
build-backend = "setuptools.build_meta"

[tool.setuptools]
py-modules = [
    "asap"
]

[tool.setuptools_scm]
version_file = "asap/_version.py"

# some downgrades from pixi's expectations
[tool.pixi.system-requirements]
linux = "5.0.0"
libc = "2.27"

[tool.pixi.project]
channels = ["conda-forge"]
platforms = ["linux-64"]

[tool.pixi.pypi-dependencies]
asap = { path = ".", editable = true }

# conda-enabled features
[tool.pixi.feature.pixi-base.dependencies]
numpy = "*"
pandas = "*"
scipy = "*"
imageio = "*"
matplotlib = "*"
petsc4py = "*"
python-igraph = "*"

# version-specific python features
[tool.pixi.feature.py310.dependencies]
python = "3.10.*"
[tool.pixi.feature.py311.dependencies]
python = "3.11.*"

[tool.pixi.feature.jupyterlab.dependencies]
jupyterlab = "*"

[tool.pixi.environments]
py310 = ["py310"]
py310-test = ["py310", "test"]
py311 = ["py311"]
py311-test = ["py311", "test"]
py310-conda = ["py310", "pixi-base"]
py310-conda-test = ["py310", "pixi-base", "test"]
py311-conda = ["py311", "pixi-base"]
py311-conda-test = ["py311", "pixi-base", "test"]
py311-jupyter = ["py311", "pixi-base", "jupyterlab"]

[tool.coverage.run]
omit = ["integration_tests/*", "tests/*"]

[tool.pixi.feature.test.tasks]
test = "pytest  --cov --cov-report=xml --junitxml=test-reports/test.xml"