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Hi!
I am trying to set up a network of point neuron model using PointNet, but I encountered an error when trying to set inhibitory synapses.
I tried to use this example on the BMTK GitHub, but I got the following error:
---------------------------------------------------------------------------
OverflowError Traceback (most recent call last)
Cell In[11], line 7
4 configure.build_env()
6 network = pointnet.PointNetwork.from_config(configure)
----> 7 sim = pointnet.PointSimulator.from_config(configure, network)
8 sim.run()
File [/opt/anaconda3/envs/Test_BMTK/lib/python3.12/site-packages/bmtk/simulator/pointnet/pointsimulator.py:340](http://localhost:8888/opt/anaconda3/envs/Test_BMTK/lib/python3.12/site-packages/bmtk/simulator/pointnet/pointsimulator.py#line=339), in PointSimulator.from_config(cls, configure, graph, n_thread)
337 graph.build_nodes()
339 graph.io.log_info('Building recurrent connections')
--> 340 graph.build_recurrent_edges()
342 io.log_info('Network created.')
343 return network
File [/opt/anaconda3/envs/Test_BMTK/lib/python3.12/site-packages/bmtk/simulator/pointnet/pointnetwork.py:175](http://localhost:8888/opt/anaconda3/envs/Test_BMTK/lib/python3.12/site-packages/bmtk/simulator/pointnet/pointnetwork.py#line=174), in PointNetwork.build_recurrent_edges(self, force_resolution)
172 return
174 for edge_pop in recurrent_edge_pops:
--> 175 for edge in edge_pop.get_edges():
176 nest_srcs = self.gid_map.get_nestids(edge_pop.source_nodes, edge.source_node_ids)
177 nest_trgs = self.gid_map.get_nestids(edge_pop.target_nodes, edge.target_node_ids)
File [/opt/anaconda3/envs/Test_BMTK/lib/python3.12/site-packages/bmtk/simulator/core/sonata_reader/network_reader.py:191](http://localhost:8888/opt/anaconda3/envs/Test_BMTK/lib/python3.12/site-packages/bmtk/simulator/core/sonata_reader/network_reader.py#line=190), in SonataEdges.get_edges(self)
189 edge_adaptor = self._edge_adaptors[edge_group.group_id]
190 if edge_adaptor.batch_process:
--> 191 for edge in edge_adaptor.get_batches(edge_group):
192 yield edge
193 else:
File [/opt/anaconda3/envs/Test_BMTK/lib/python3.12/site-packages/bmtk/simulator/pointnet/sonata_adaptors.py:396](http://localhost:8888/opt/anaconda3/envs/Test_BMTK/lib/python3.12/site-packages/bmtk/simulator/pointnet/sonata_adaptors.py#line=395), in PointEdgeAdaptor.get_batches(self, edge_group)
393 raise Exception('Could not find syn_weight value')
395 # caluclate weight
--> 396 type_params[edge_id]['weight'] = nsyns * syn_weight
398 yield PointEdgeBatched(source_nids=grp_vals['src_nids'].values, target_nids=grp_vals['trg_nids'].values,
399 nest_params=type_params[edge_id])
OverflowError: Python integer -550 out of bounds for uint32
I tried with a custom network, but I had the same error. From what I understand, I cannot assign negative synaptic weight, but then, I don't know how to make a specific connection inhibitory.
Do you have any idea why I am getting this error and what I could do?
I am using BMTK version 1.1.2 in python 3.12.11.
Thank you for your help!
Best,
Julien
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