downgrade back to python 3.9

Author: rcpeene

docs/visualization/visualize_neuropixels_probes.ipynb

@@ -44,7 +44,12 @@
    "source": [
     "import numpy as np\n",
     "\n",
-    "from ccfwidget import CCFWidget"
+    "from ccfwidget import CCFWidget\n",
+    "\n",
+    "# required because CCFwidgets is not using latest version of collections.abc\n",
+    "import collections\n",
+    "import collections.abc\n",
+    "collections.Sequence = collections.abc.Sequence"
    ]
   },
   {
@@ -72,13 +77,6 @@
    "execution_count": 4,
    "metadata": {},
    "outputs": [
-    {
-     "name": "stderr",
-     "output_type": "stream",
-     "text": [
-      "A newer version (0.62.2) of dandi/dandi-cli is available. You are using 0.61.2\n"
-     ]
-    },
     {
      "name": "stdout",
      "output_type": "stream",
@@ -157,31 +155,48 @@
   {
    "cell_type": "code",
    "execution_count": 7,
-   "metadata": {},
-   "outputs": [],
+   "metadata": {
+    "tags": [
+     "skip-execution"
+    ]
+   },
+   "outputs": [
+    {
+     "ename": "",
+     "evalue": "",
+     "output_type": "error",
+     "traceback": [
+      "\u001b[1;31mThe Kernel crashed while executing code in the current cell or a previous cell. \n",
+      "\u001b[1;31mPlease review the code in the cell(s) to identify a possible cause of the failure. \n",
+      "\u001b[1;31mClick <a href='https://aka.ms/vscodeJupyterKernelCrash'>here</a> for more info. \n",
+      "\u001b[1;31mView Jupyter <a href='command:jupyter.viewOutput'>log</a> for further details."
+     ]
+    }
+   ],
    "source": [
     "# the 'markers' parameter will expect an iterable where each point is represented as [x,y,z]\n",
     "ccf = CCFWidget(markers=[points])"
    ]
   },
   {
    "cell_type": "code",
-   "execution_count": 8,
-   "metadata": {},
+   "execution_count": 1,
+   "metadata": {
+    "tags": [
+     "skip-execution"
+    ]
+   },
    "outputs": [
     {
-     "data": {
-      "application/vnd.jupyter.widget-view+json": {
-       "model_id": "683c4a818ea14ff69df65c1d0d563866",
-       "version_major": 2,
-       "version_minor": 0
-      },
-      "text/plain": [
-       "CCFWidget(children=(VBox(children=(Viewer(background=(0.85, 0.85, 0.85), camera=array([[ 1.3441567e+03, -2.172…"
-      ]
-     },
-     "metadata": {},
-     "output_type": "display_data"
+     "ename": "NameError",
+     "evalue": "name 'ccf' is not defined",
+     "output_type": "error",
+     "traceback": [
+      "\u001b[1;31m---------------------------------------------------------------------------\u001b[0m",
+      "\u001b[1;31mNameError\u001b[0m                                 Traceback (most recent call last)",
+      "Cell \u001b[1;32mIn[1], line 1\u001b[0m\n\u001b[1;32m----> 1\u001b[0m \u001b[43mccf\u001b[49m\n",
+      "\u001b[1;31mNameError\u001b[0m: name 'ccf' is not defined"
+     ]
     }
    ],
    "source": [
@@ -191,7 +206,7 @@
  ],
  "metadata": {
   "kernelspec": {
-   "display_name": "Python 3 (ipykernel)",
+   "display_name": "Python 3",
    "language": "python",
    "name": "python3"
   },
@@ -205,7 +220,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.10.8"
+   "version": "3.9.13"
   }
  },
  "nbformat": 4,

requirements.txt

@@ -23,8 +23,8 @@ pynwb==2.6.0
 pytest-xdist==3.5.0
 quantities==0.14.1
 remfile==0.1.10
-scikit-image==0.25
-scipy==1.15
+scikit-image==0.24
+scipy==1.13.1
 # ssm @ git+https://github.com/lindermanlab/ssm
 statsmodels==0.14.0
 suite2p==0.14