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update nway matching to work across systems
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-36
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3 files changed

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.github/workflows/build.yml

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@@ -56,6 +56,11 @@ jobs:
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- name: Printing environment
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run: pip freeze
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- name: Testing Embargoed Notebooks
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run: |
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pytest --nbmake --nbmake-timeout=8000 -n=auto "./docs/embargoed"
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rm ./docs/embargoed/*.nwb
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- name: Testing Basics Notebooks
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run: |
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pytest --nbmake --nbmake-timeout=100000 -n=auto "./docs/basics"
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pytest --nbmake --nbmake-timeout=8000 -n=auto "./docs/projects"
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rm ./docs/projects/*.nwb
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- name: Testing Embargoed Notebooks
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run: |
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pytest --nbmake --nbmake-timeout=8000 -n=auto "./docs/embargoed"
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rm ./docs/embargoed/*.nwb
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- name: Printing log
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run: |
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git config --global --add safe.directory /__w/openscope_databook/openscope_databook

docs/embargoed/cell_matching.ipynb

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requirements.txt

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@@ -14,16 +14,16 @@ mpl-interactions==0.22.0
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nbmake==1.5.3
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neo==0.13.0
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numcodecs==0.11.0
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numpy==1.26.2
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numpy==1.24.3
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nwbwidgets
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ophys-nway-matching @ git+https://github.com/AllenInstitute/ophys_nway_matching@545504ab55922717ab623f8ede2c521a60aa1458
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ophys-nway-matching @ git+https://github.com/AllenInstitute/ophys_nway_matching.git
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pandas==1.5.2
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Pillow==11
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pynwb==2.6.0
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pytest-xdist==3.5.0
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quantities==0.14.1
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remfile==0.1.10
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scikit-image==0.24
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scikit-image==0.18.3
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scipy==1.13.1
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# ssm @ git+https://github.com/lindermanlab/ssm
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statsmodels==0.14.0

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