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@AllenNeuralDynamics

Allen Institute for Neural Dynamics

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  1. aind-data-schema aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    Python 26 17

  2. aind-ephys-pipeline aind-ephys-pipeline Public

    AIND pipeline for processing extracellular electrophysiology data

    Nextflow 16 7

  3. openscope-community-predictive-processing openscope-community-predictive-processing Public

    This repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.

    Python 14 12

  4. aind-ephys-spikesort-kilosort25-full aind-ephys-spikesort-kilosort25-full Public

    CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.

    Python 12 3

  5. segmentation-skeleton-metrics segmentation-skeleton-metrics Public

    A Python package for evaluating the topological accuracy of a neuron segmentation by computing skeleton-based metrics.

    Python 8

  6. ibl-ephys-alignment-gui ibl-ephys-alignment-gui Public

    Forked from int-brain-lab/iblapps

    Tool for aligning electrophysiological features to anatomical landmarks

    Python 8 3

Repositories

Showing 10 of 511 repositories
  • ibl-ephys-alignment-gui Public Forked from int-brain-lab/iblapps

    Tool for aligning electrophysiological features to anatomical landmarks

    AllenNeuralDynamics/ibl-ephys-alignment-gui’s past year of commit activity
    Python 8 MIT 17 0 2 Updated Nov 1, 2025
  • Aind.Behavior.VrForaging.Curricula Public

    A repository with curricula for the VrForaging platform

    AllenNeuralDynamics/Aind.Behavior.VrForaging.Curricula’s past year of commit activity
    Python 0 MIT 0 3 2 Updated Nov 1, 2025
  • aind-proteomics-stitch Public

    Stitching for the proteomics pipeline

    AllenNeuralDynamics/aind-proteomics-stitch’s past year of commit activity
    Python 0 MIT 0 3 0 Updated Nov 1, 2025
  • Aind.Experiment.VrForaging-Fip Public

    A repository to run VrForaging + Fip experiments

    AllenNeuralDynamics/Aind.Experiment.VrForaging-Fip’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Nov 1, 2025
  • aind-data-transfer-service Public

    FastAPI service to run data compression and transfer jobs on the hpc

    AllenNeuralDynamics/aind-data-transfer-service’s past year of commit activity
    Python 3 MIT 0 8 0 Updated Oct 31, 2025
  • AllenNeuralDynamics/Aind.Physiology.Fip’s past year of commit activity
    C# 0 MIT 0 7 2 Updated Oct 31, 2025
  • AllenNeuralDynamics/aind-neuroglancer-game’s past year of commit activity
    TypeScript 0 Apache-2.0 1 14 1 Updated Oct 31, 2025
  • neurogabber Public

    Tall to embedded neuroglancer views with an LLM.

    AllenNeuralDynamics/neurogabber’s past year of commit activity
    Python 0 MIT 0 0 2 Updated Oct 31, 2025
  • image-compression-challenge Public

    A python package for scoring submissions to an image compression challenge on Kaggle.

    AllenNeuralDynamics/image-compression-challenge’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Oct 31, 2025
  • aind-metadata-extractor Public

    Metadata extractors for AIND

    AllenNeuralDynamics/aind-metadata-extractor’s past year of commit activity
    Python 0 MIT 0 1 7 Updated Oct 31, 2025