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Feat/issue-255-add-ser-per#256

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XingerTang merged 1 commit into
AlphaGenes:develfrom
XingerTang:feat/issue-255-add-ser-per
Apr 30, 2026
Merged

Feat/issue-255-add-ser-per#256
XingerTang merged 1 commit into
AlphaGenes:develfrom
XingerTang:feat/issue-255-add-ser-per

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Related Issue

Closes #255

What changed

  • Add SER, PER calculation code to utils.py

Why this change

See #255

Notes / Risks

  • Indepent file, expect no dependency issue

Comment thread docs/source/usage.rst
Comment thread docs/source/usage.rst
Comment thread src/tinypeel/tinypeel.py
Comment thread src/tinypeel/tinypeel.py
Comment thread src/tinypeel/tinypeel.py
Comment thread src/tinypeel/tinypeel.py
Comment thread src/utils.py Outdated
Comment thread src/utils.py Outdated
Comment thread src/utils.py Outdated
Comment thread src/utils.py Outdated
Comment thread src/utils.py Outdated
Comment thread src/utils.py Outdated
Comment thread src/utils.py Outdated

@gregorgorjanc gregorgorjanc left a comment

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See the above comments @XingerTang

@XingerTang XingerTang force-pushed the feat/issue-255-add-ser-per branch from c0a35e6 to e4a60ae Compare April 29, 2026 10:49
Comment thread src/utils.py Outdated
Comment thread src/utils.py Outdated
Comment thread src/utils.py Outdated
help="Enter the path of the true haplotype file, default is the simulation path",
)
parser.add_argument(
"-file_name",

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Apologies for being a pest, but shouldn't this be -called_path or similar (-called_file), to match the -true_path or similar (-true_file)?

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You are right, consistency is important.

@gregorgorjanc gregorgorjanc left a comment

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Looks good now @XingerTang! Merge time;)

@XingerTang XingerTang force-pushed the feat/issue-255-add-ser-per branch from a8106a4 to bcd9656 Compare April 30, 2026 10:38
@XingerTang XingerTang merged commit 9a1a5ee into AlphaGenes:devel Apr 30, 2026
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2 participants