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Arc Research Institute

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  1. evo2 evo2 Public

    Genome modeling and design across all domains of life

    Jupyter Notebook 2.7k 286

  2. arc-virtual-cell-atlas arc-virtual-cell-atlas Public

    Arc Virtual Cell Atlas

    Jupyter Notebook 276 27

  3. xsra xsra Public

    An efficient CLI to extract sequences from the SRA

    Rust 85 6

  4. SRAgent SRAgent Public

    LLM agents for working with the SRA and associated bioinformatics databases.

    Python 79 13

  5. binseq binseq Public

    A high efficiency binary format for sequencing data

    Rust 45 2

  6. ScreenPro2 ScreenPro2 Public

    Flexible analysis of high-content CRISPR screening

    Python 31 6

Repositories

Showing 10 of 21 repositories
  • pdex Public

    parallel differential expression for single-cell perturbation sequencing

    ArcInstitute/pdex’s past year of commit activity
    Python 0 MIT 0 0 0 Updated May 6, 2025
  • SRAgent Public

    LLM agents for working with the SRA and associated bioinformatics databases.

    ArcInstitute/SRAgent’s past year of commit activity
    Python 79 MIT 13 1 0 Updated May 6, 2025
  • arc-virtual-cell-atlas Public

    Arc Virtual Cell Atlas

    ArcInstitute/arc-virtual-cell-atlas’s past year of commit activity
    Jupyter Notebook 276 27 7 0 Updated May 6, 2025
  • scRecounter Public

    Nextflow pipeline to re-process all public single-cell RNA-seq data

    ArcInstitute/scRecounter’s past year of commit activity
    Jupyter Notebook 21 MIT 2 0 0 Updated May 5, 2025
  • mmr Public

    A minimap2 implementation with binseq inputs

    ArcInstitute/mmr’s past year of commit activity
    Rust 14 0 1 0 Updated May 2, 2025
  • binseq-bindings Public

    C-Bindings to the BINSEQ library

    ArcInstitute/binseq-bindings’s past year of commit activity
    Rust 0 2 0 1 Updated May 2, 2025
  • binseq Public

    A high efficiency binary format for sequencing data

    ArcInstitute/binseq’s past year of commit activity
    Rust 45 2 3 0 Updated May 2, 2025
  • xsra Public

    An efficient CLI to extract sequences from the SRA

    ArcInstitute/xsra’s past year of commit activity
    Rust 85 6 5 0 Updated May 1, 2025
  • ncbi-vdb-sys Public

    Rust bindings to NCBI-VDB to interact with SRA files programmatically

    ArcInstitute/ncbi-vdb-sys’s past year of commit activity
    Rust 4 0 0 0 Updated May 1, 2025
  • evo2 Public

    Genome modeling and design across all domains of life

    ArcInstitute/evo2’s past year of commit activity
    Jupyter Notebook 2,745 Apache-2.0 286 14 2 Updated Apr 26, 2025
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