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Arc Research Institute

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  1. evo2 evo2 Public

    Genome modeling and design across all domains of life

    Jupyter Notebook 2.6k 265

  2. arc-virtual-cell-atlas arc-virtual-cell-atlas Public

    Arc Virtual Cell Atlas

    Jupyter Notebook 241 20

  3. SRAgent SRAgent Public

    LLM agents for working with the SRA and associated bioinformatics databases.

    Python 59 5

  4. ScreenPro2 ScreenPro2 Public

    Flexible analysis of high-content CRISPR screening

    Python 28 5

  5. scRecounter scRecounter Public

    Nextflow pipeline to re-process all public single-cell RNA-seq data

    Jupyter Notebook 12 1

  6. RNAtargeting_web_custom RNAtargeting_web_custom Public

    source code of the custom page for the RNA targeting website - Cas13d guide design

    C 5

Repositories

Showing 10 of 12 repositories
  • SRAgent Public

    LLM agents for working with the SRA and associated bioinformatics databases.

    ArcInstitute/SRAgent’s past year of commit activity
    Python 59 MIT 5 1 0 Updated Apr 1, 2025
  • Lizard-Wizard Public

    Calcium imaging analysis Nextflow pipeline for the Arc Institute

    ArcInstitute/Lizard-Wizard’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Mar 26, 2025
  • arc-virtual-cell-atlas Public

    Arc Virtual Cell Atlas

    ArcInstitute/arc-virtual-cell-atlas’s past year of commit activity
    Jupyter Notebook 241 20 5 0 Updated Mar 25, 2025
  • Wizards-Staff Public

    Calcium imaging analysis pipeline of outputs from Lizard-Wizard for the Arc Institute.

    ArcInstitute/Wizards-Staff’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Mar 21, 2025
  • evo2 Public

    Genome modeling and design across all domains of life

    ArcInstitute/evo2’s past year of commit activity
    Jupyter Notebook 2,632 Apache-2.0 265 30 1 Updated Mar 20, 2025
  • scRecounter Public

    Nextflow pipeline to re-process all public single-cell RNA-seq data

    ArcInstitute/scRecounter’s past year of commit activity
    Jupyter Notebook 12 MIT 1 0 0 Updated Mar 5, 2025
  • scBaseCamp_analysis Public

    Analysis of scBaseCamp data

    ArcInstitute/scBaseCamp_analysis’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Feb 27, 2025
  • ScreenPro2 Public

    Flexible analysis of high-content CRISPR screening

    ArcInstitute/ScreenPro2’s past year of commit activity
    Python 28 5 12 (1 issue needs help) 0 Updated Feb 10, 2025
  • arc-cluster-toolkit Public Forked from GoogleCloudPlatform/cluster-toolkit

    Cluster Toolkit is an open-source software offered by Google Cloud which makes it easy for customers to deploy AI/ML and HPC environments on Google Cloud.

    ArcInstitute/arc-cluster-toolkit’s past year of commit activity
    HCL 1 Apache-2.0 180 0 0 Updated Dec 26, 2024
  • ArcInstitute/InVivoMultimodalPerturbation’s past year of commit activity
    Python 0 1 0 0 Updated Aug 29, 2024

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