pyproject.toml

[build-system]
requires = ["setuptools>=42", "wheel", "build"]
build-backend = "setuptools.build_meta"

[project]
name = "SRAgent"
version = "0.1.1"
description = "Agentic workflows for obtaining data from the Sequence Read Archive"
readme = "README.md"
requires-python = ">=3.10"
license = { file = "LICENSE" }
authors = [
    { name = "Nick Youngblut", email = "nyoungb2@gmail.com" },
]
urls = { "Homepage" = "https://github.com/arcinstitute/SRAgent" }
dependencies = [
    "python-dotenv==1.0.1",
    "pandas==2.2.3",
    "tabulate==0.9.0",
    "langchain==0.3.7",
    "langchainhub==0.1.21",
    "langchain_community==0.3.5",
    "openai==1.57.2",
    "langchain_openai==0.2.6",
    "langgraph==0.2.45",
    "biopython==1.84",
    "xmltodict==0.14.2",
    "beautifulsoup4==4.12.3",
    "google-cloud-bigquery==3.27.0",
    "google-cloud-bigquery-storage==2.27.0",
    "google-cloud-secret-manager==2.22.0",
    "db-dtypes==1.3.1",
    "pypika==0.48.9",
    "psycopg2-binary==2.9.10",
    "dynaconf==3.2.6"
]

[project.scripts]
SRAgent = "SRAgent.cli.__main__:main"

[tool.setuptools.packages.find]
where = ["."]
include = ["SRAgent", "SRAgent.*"]
exclude = ["tmp", "data", "tests", "*.tests", "*.tests.*", "tests.*", "tests"]

[tool.setuptools]
include-package-data = true

[tool.setuptools.package-data]
SRAgent = ["settings.yml"]

[tool.dynaconf]
default_environment = "default"
env_switcher = "DYNACONF"
settings_files = ["settings.yml"]