Add version check #32
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| @@ -8,6 +8,10 @@ PROJECT_ROOT=${PROJECT_ROOT:-/srv/scratch/sbf-pipelines/proteinfold} | |||
| set -x pipefail | |||
| set -e | |||
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| # Set dependency version numbers | |||
| VERSION_SAMPLESHEET_UTILS="1.1.2" | |||
| VERISON_PROTEINFOLD_HASH="fd01013a6109300c917e12356bce0d2297ed1a0e" | |||
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We should probably lock after 2306cd9 to avoid re-introducing the cif symlink problem
jscgh
requested changes
Apr 28, 2025
| @@ -8,6 +8,10 @@ PROJECT_ROOT=${PROJECT_ROOT:-/srv/scratch/sbf-pipelines/proteinfold} | |||
| set -x pipefail | |||
| set -e | |||
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| # Set dependency version numbers | |||
| VERSION_SAMPLESHEET_UTILS="1.1.2" | |||
| VERISON_PROTEINFOLD_HASH="fd01013a6109300c917e12356bce0d2297ed1a0e" | |||
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Suggested change
| VERISON_PROTEINFOLD_HASH="fd01013a6109300c917e12356bce0d2297ed1a0e" | |
| VERSION_PROTEINFOLD_HASH="fd01013a6109300c917e12356bce0d2297ed1a0e" |
| #$tmp_prev_wd=$(pwd) | ||
| #cd "${PROJECT_ROOT}/${RUN_ENVIRONMENT}" | ||
| #LOCAL_PROTEINFOLD_HASH="git rev-parse HEAD" | ||
| #if [ "${LOCAL_PROTEINFOLD_VERSION}" != "${VERISON_PROTEINFOLD_HASH}"]; then |
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Suggested change
| #if [ "${LOCAL_PROTEINFOLD_VERSION}" != "${VERISON_PROTEINFOLD_HASH}"]; then | |
| #if [ "${LOCAL_PROTEINFOLD_VERSION}" != "${VERSION_PROTEINFOLD_HASH}"]; then |
| @@ -98,7 +127,7 @@ ARGS="" | |||
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| module load cuda/10.1.243 cuda/11.8.0 cuda/12.2.1 cuda/12.5.0 cudnn/8.4.0.27-11.6 cudnn/8.6.0.163-11.8 cudnn/9.2.0.82-12 cudnn/9.3.0.75-12 | |||
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| nextflow -c "/srv/scratch/sbf-pipelines/proteinfold/kod_proteinfold.config" run main.nf \ | |||
| nextflow -c "/srv/scratch/sbf-pipelines/proteinfold/kod_proteinfold.config" run Australian-Structural-Biology-Computing/proteinfold -r ${VERISON_PROTEINFOLD_HASH} \ | |||
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Suggested change
| nextflow -c "/srv/scratch/sbf-pipelines/proteinfold/kod_proteinfold.config" run Australian-Structural-Biology-Computing/proteinfold -r ${VERISON_PROTEINFOLD_HASH} \ | |
| nextflow -c "/srv/scratch/sbf-pipelines/proteinfold/kod_proteinfold.config" run Australian-Structural-Biology-Computing/proteinfold -r ${VERSION_PROTEINFOLD_HASH} \ |
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Check versions before starting the pipeline