v0.4.5

• Removed defaults channel from conda env file (Issue #84)

v0.4.4

• Request more memory for kraken2 (Issue #78)

v0.4.3

• Fixed issue where fastqc used system tmpdir, leading to intermittent crashes when /tmp ran out of capacity (Issue #76)

v0.4.2

• Updated illumina-interop to v1.2.4 for compatibility with latest runs (Issue #74)

v0.4.1

• Include unclassified reads in top-5 species and top-3 genus outputs (Issue #72)

v0.4.0

• Adjust bracken taxon abundance estimates to account for unclassified reads (Issue #68)
• Include NCBI taxonomy IDs in top-N abundance outputs (Issue #70)

v0.3.4

• Fixed issue where pipeline could not be pulled due to problems parsing the nextflow.config file.

v0.3.3

• Fixed issue where the latest fastq files would not be correctly found when de-multiplexing was repeated on NextSeq runs (Issue #59)

v0.3.2

• Fixed issue where seqtk_fqchk process would fail on an empty fastq input (Issue #47)
• Fixed issue where summarize_seqtk_fqchk.py script would fail on empty fastq input (Issue #50)

v0.3.1

• Fixed issue where duplicate sample IDs would cause the pipeline to crash. This update enforces that all sample IDs on a run should be unique. Duplicates are dropped from analysis. (Issue #41)
• Fixed issue where SampleSheet parsers would parse empty csv lines and include them in the output (Issue #42)