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Fix conda config, bump version (#21) Build and Push Container Images #28: Commit 8474e4a pushed by dfornika
1m 10s v0.1.3
v0.1.3
1m 10s
add apptainer workflow scripts and provenance and add details to READ… Build and Push Container Images #27: Commit 1835d6f pushed by taranewman
1m 3s v0.1.2
v0.1.2
1m 3s
revert environment options and disable java perforamnce shared memory… Build and Push Container Images #26: Commit 3ed9bf7 pushed by taranewman
1m 15s add-apptainer-support
add-apptainer-support
1m 15s
test samtools and java version combo Build and Push Container Images #25: Commit 1b7c78c pushed by taranewman
8m 8s add-apptainer-support
add-apptainer-support
8m 8s
test specifying samtools env Build and Push Container Images #24: Commit 66973f2 pushed by taranewman
6m 37s add-apptainer-support
add-apptainer-support
6m 37s
specify java version in environment yml Build and Push Container Images #23: Commit b596d77 pushed by taranewman
6m 32s add-apptainer-support
add-apptainer-support
6m 32s
add new line at end of environment file Build and Push Container Images #22: Commit 72b7e68 pushed by taranewman
49s add-apptainer-support
add-apptainer-support
49s
add empty line at end of environment.yml Build and Push Container Images #21: Commit e80abd3 pushed by taranewman
43s add-apptainer-support
add-apptainer-support
43s
remove extra whitespace Build and Push Container Images #20: Commit 1f3071c pushed by taranewman
44s add-apptainer-support
add-apptainer-support
44s
revert changes made during environment testing Build and Push Container Images #19: Commit 5283187 pushed by taranewman
48s add-apptainer-support
add-apptainer-support
48s
add snpEff 5.1 version Build and Push Container Images #18: Commit 9d5e346 pushed by taranewman
7m 6s add-apptainer-support
add-apptainer-support
7m 6s
test version 22 java Build and Push Container Images #17: Commit a57bb4c pushed by taranewman
5m 54s add-apptainer-support
add-apptainer-support
5m 54s
test downgrading java environment Build and Push Container Images #16: Commit 7010cbc pushed by taranewman
6m 48s add-apptainer-support
add-apptainer-support
6m 48s
simpler environment testing Build and Push Container Images #15: Commit ab457c8 pushed by taranewman
4m 47s add-apptainer-support
add-apptainer-support
4m 47s
try pinning freebayes Build and Push Container Images #14: Commit f57cae2 pushed by taranewman
7m 22s add-apptainer-support
add-apptainer-support
7m 22s
downgrade samtools and make snpEff flexible Build and Push Container Images #13: Commit da074bf pushed by taranewman
6m 1s add-apptainer-support
add-apptainer-support
6m 1s
test specific samtools snpEff combo Build and Push Container Images #12: Commit 4f4d6ac pushed by taranewman
8m 2s add-apptainer-support
add-apptainer-support
8m 2s
pin samtools less then 1.21 Build and Push Container Images #11: Commit 3ab27e6 pushed by taranewman
8m 6s add-apptainer-support
add-apptainer-support
8m 6s
remove samtools pin Build and Push Container Images #10: Commit cb7d9bd pushed by taranewman
6m 54s add-apptainer-support
add-apptainer-support
6m 54s
add bc tool to environment Build and Push Container Images #9: Commit 1a06e91 pushed by taranewman
7m 0s add-apptainer-support
add-apptainer-support
7m 0s
try downgrading samtools version Build and Push Container Images #8: Commit a4713e4 pushed by taranewman
7m 11s add-apptainer-support
add-apptainer-support
7m 11s
pin samtools version due to /tseemann/snippy/issues/598 Build and Push Container Images #7: Commit a7afe81 pushed by taranewman
7m 13s add-apptainer-support
add-apptainer-support
7m 13s
try snpEff v5.1 Build and Push Container Images #6: Commit 0fc3aca pushed by taranewman
5m 58s add-apptainer-support
add-apptainer-support
5m 58s
test snpEff version change Build and Push Container Images #5: Commit b4787d9 pushed by taranewman
2m 0s add-apptainer-support
add-apptainer-support
2m 0s
pin snpEff version Build and Push Container Images #4: Commit b758d8e pushed by taranewman
6m 44s add-apptainer-support
add-apptainer-support
6m 44s