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BIONF

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  1. PhyloProfile PhyloProfile Public

    A phylogenetic profile analysis tool

    R 37 11

  2. fDOG fDOG Public

    Feature-aware Directed OrtholoG search

    Python 14 4

  3. HaMStR HaMStR Public

    Feature-aware orthology prediction tool. Provided data package: Quest for Orthologs reference gene sets 2019.

    Perl 9 2

  4. FAS FAS Public

    FAS - Tool for Feature Architecture Similarity calculation

    Python 6 1

  5. taXaminer taXaminer Public

    Forked from fdarthen/taXaminer

    Interactive exploration of biodiverse genome assemblies

    Python 5 1

  6. protTrace protTrace Public

    A simulation based framework to estimate the evolutionary traceability of protein.

    Python 4 4

Repositories

Showing 10 of 27 repositories
  • FAS Public

    FAS - Tool for Feature Architecture Similarity calculation

    BIONF/FAS’s past year of commit activity
    Python 6 GPL-3.0 1 4 0 Updated Dec 5, 2025
  • XspecT Public

    XspecT is a very fast, memory efficient and easy-to-use tool to taxonomically classify raw sequence-data, whole genome assemblies or metagenomes on the species and sub-species level

    BIONF/XspecT’s past year of commit activity
    Python 0 MIT 1 1 0 Updated Dec 3, 2025
  • PhyloProfile Public

    A phylogenetic profile analysis tool

    BIONF/PhyloProfile’s past year of commit activity
    R 37 11 8 0 Updated Nov 18, 2025
  • taxaminer-dashboard Public

    Web-based visualization and exploration of taXaminer datasets

    BIONF/taxaminer-dashboard’s past year of commit activity
    TypeScript 1 MIT 2 3 0 Updated Nov 12, 2025
  • fCAT Public Forked from trvinh/fCAT

    Python package for fCAT, a feature-aware completeness assessment tool

    BIONF/fCAT’s past year of commit activity
    Python 2 GPL-3.0 2 3 0 Updated Oct 28, 2025
  • digital_competence Public
    BIONF/digital_competence’s past year of commit activity
    Jupyter Notebook 0 2 0 1 Updated Oct 20, 2025
  • phyloprofile-data Public

    Data files for PhyloProfile tool

    BIONF/phyloprofile-data’s past year of commit activity
    1 MIT 1 0 0 Updated Oct 20, 2025
  • fDOG Public

    Feature-aware Directed OrtholoG search

    BIONF/fDOG’s past year of commit activity
    Python 14 GPL-3.0 4 5 0 Updated Oct 6, 2025
  • PhyloProfileData Public

    The PhyloProfileData package provides a collection of datasets to accompany the PhyloProfile package

    BIONF/PhyloProfileData’s past year of commit activity
    R 0 0 0 0 Updated Jun 25, 2025
  • PhylopPCD Public Forked from trvinh/PhylopPCD
    BIONF/PhylopPCD’s past year of commit activity
    R 0 MIT 1 0 0 Updated May 14, 2025
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