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68 changes: 33 additions & 35 deletions Examples/Physics_applications/capacitive_discharge/analysis_1d.py
Original file line number Diff line number Diff line change
Expand Up @@ -5,41 +5,39 @@
import numpy as np

# fmt: off
ref_density = np.array([
1.27989677e+14, 2.23601330e+14, 2.55400265e+14, 2.55664972e+14,
2.55806841e+14, 2.55806052e+14, 2.55815865e+14, 2.55755151e+14,
2.55920582e+14, 2.56078972e+14, 2.55933056e+14, 2.55840862e+14,
2.56043990e+14, 2.56247464e+14, 2.56289153e+14, 2.56277109e+14,
2.56242679e+14, 2.56328850e+14, 2.56373595e+14, 2.56395979e+14,
2.56451842e+14, 2.56601614e+14, 2.56530735e+14, 2.56113125e+14,
2.56207966e+14, 2.56474622e+14, 2.56378743e+14, 2.56230373e+14,
2.56271563e+14, 2.56317460e+14, 2.56137709e+14, 2.56104767e+14,
2.56244330e+14, 2.56188574e+14, 2.56070283e+14, 2.56212277e+14,
2.56374214e+14, 2.56309276e+14, 2.56199679e+14, 2.56227549e+14,
2.56434824e+14, 2.56578649e+14, 2.56418136e+14, 2.56781877e+14,
2.57464056e+14, 2.57125505e+14, 2.56477914e+14, 2.56355343e+14,
2.56599651e+14, 2.56955102e+14, 2.56988933e+14, 2.56954167e+14,
2.56848084e+14, 2.56278229e+14, 2.55969967e+14, 2.56075186e+14,
2.56011026e+14, 2.56054081e+14, 2.56203573e+14, 2.56131373e+14,
2.56181410e+14, 2.56460942e+14, 2.56519893e+14, 2.56394874e+14,
2.56273725e+14, 2.56263570e+14, 2.56463482e+14, 2.56541354e+14,
2.56467160e+14, 2.56523576e+14, 2.56760359e+14, 2.56899283e+14,
2.56889333e+14, 2.56984101e+14, 2.57009449e+14, 2.57017095e+14,
2.57027915e+14, 2.57002409e+14, 2.56938087e+14, 2.56604366e+14,
2.56392558e+14, 2.56481669e+14, 2.56337220e+14, 2.56107563e+14,
2.56286144e+14, 2.56451638e+14, 2.56547674e+14, 2.56846908e+14,
2.56725251e+14, 2.56321829e+14, 2.56387226e+14, 2.56750085e+14,
2.56775478e+14, 2.56589827e+14, 2.56723109e+14, 2.56698688e+14,
2.56674607e+14, 2.57128951e+14, 2.57144972e+14, 2.56602827e+14,
2.56564415e+14, 2.56824494e+14, 2.56459673e+14, 2.56106618e+14,
2.56442627e+14, 2.57106509e+14, 2.57468066e+14, 2.57155708e+14,
2.56501993e+14, 2.56062276e+14, 2.56109738e+14, 2.56284272e+14,
2.56320557e+14, 2.56253594e+14, 2.56155365e+14, 2.56044920e+14,
2.55994560e+14, 2.56166612e+14, 2.56327633e+14, 2.56390898e+14,
2.56474891e+14, 2.56669566e+14, 2.56646041e+14, 2.56264156e+14,
2.56041610e+14, 2.56041551e+14, 2.56088641e+14, 2.23853646e+14,
1.27580207e+14
])
ref_density = np.array([1.27990259e+14, 2.23601569e+14, 2.55400215e+14, 2.55665098e+14,
2.55806797e+14, 2.55805918e+14, 2.55816108e+14, 2.55755377e+14,
2.55920285e+14, 2.56083199e+14, 2.56054450e+14, 2.56103214e+14,
2.56222557e+14, 2.56284749e+14, 2.56343320e+14, 2.56387991e+14,
2.56303454e+14, 2.56346773e+14, 2.56441603e+14, 2.56462627e+14,
2.56508488e+14, 2.56691528e+14, 2.56593166e+14, 2.56208158e+14,
2.56388192e+14, 2.56589801e+14, 2.56396235e+14, 2.56230320e+14,
2.56236087e+14, 2.56264893e+14, 2.56125755e+14, 2.56077056e+14,
2.56207109e+14, 2.56232113e+14, 2.56136318e+14, 2.56209999e+14,
2.56378230e+14, 2.56378822e+14, 2.56207420e+14, 2.56120990e+14,
2.56390073e+14, 2.56649797e+14, 2.56469593e+14, 2.56741944e+14,
2.57399736e+14, 2.57100556e+14, 2.56465250e+14, 2.56422936e+14,
2.56741587e+14, 2.57047120e+14, 2.57023908e+14, 2.56954251e+14,
2.56838184e+14, 2.56288153e+14, 2.56029636e+14, 2.56223005e+14,
2.56208323e+14, 2.56237931e+14, 2.56339188e+14, 2.56174109e+14,
2.56073267e+14, 2.56336461e+14, 2.56545406e+14, 2.56445207e+14,
2.56273923e+14, 2.56263400e+14, 2.56463456e+14, 2.56541356e+14,
2.56466994e+14, 2.56555933e+14, 2.56842791e+14, 2.56966905e+14,
2.56906948e+14, 2.56987367e+14, 2.57062725e+14, 2.57039143e+14,
2.56950060e+14, 2.56942114e+14, 2.56877605e+14, 2.56539270e+14,
2.56377558e+14, 2.56481680e+14, 2.56364016e+14, 2.56184348e+14,
2.56359310e+14, 2.56473276e+14, 2.56545531e+14, 2.56847843e+14,
2.56693956e+14, 2.56238989e+14, 2.56320714e+14, 2.56685449e+14,
2.56659388e+14, 2.56422393e+14, 2.56551297e+14, 2.56684869e+14,
2.56811439e+14, 2.57196323e+14, 2.57096031e+14, 2.56564830e+14,
2.56564489e+14, 2.56824554e+14, 2.56445125e+14, 2.56042177e+14,
2.56357221e+14, 2.57148191e+14, 2.57695239e+14, 2.57378403e+14,
2.56550721e+14, 2.55988301e+14, 2.56033732e+14, 2.56240676e+14,
2.56302958e+14, 2.56271157e+14, 2.56184840e+14, 2.56106811e+14,
2.56087050e+14, 2.56268428e+14, 2.56482574e+14, 2.56527265e+14,
2.56480073e+14, 2.56583939e+14, 2.56581533e+14, 2.56249698e+14,
2.56134574e+14, 2.56234547e+14, 2.56195670e+14, 2.23860673e+14,
1.27580261e+14])
# fmt: on

density_data = np.load("ion_density_case_1.npy")
Expand Down
68 changes: 33 additions & 35 deletions Examples/Physics_applications/capacitive_discharge/analysis_dsmc.py
Original file line number Diff line number Diff line change
Expand Up @@ -5,41 +5,39 @@
import numpy as np

# fmt: off
ref_density = np.array([
1.27942339e+14, 2.23583376e+14, 2.55396317e+14, 2.55656096e+14,
2.55810268e+14, 2.55814970e+14, 2.55812371e+14, 2.55741369e+14,
2.55905118e+14, 2.56195338e+14, 2.56329351e+14, 2.56487451e+14,
2.56612641e+14, 2.56440388e+14, 2.56232725e+14, 2.56115603e+14,
2.56098616e+14, 2.56193912e+14, 2.56091064e+14, 2.55995824e+14,
2.56023781e+14, 2.56136815e+14, 2.56305072e+14, 2.56412255e+14,
2.56520013e+14, 2.56504131e+14, 2.56516817e+14, 2.56531881e+14,
2.56562057e+14, 2.56623988e+14, 2.56613472e+14, 2.56792566e+14,
2.56943516e+14, 2.56670297e+14, 2.56498374e+14, 2.56683827e+14,
2.56535591e+14, 2.56283579e+14, 2.56382398e+14, 2.56477161e+14,
2.56376462e+14, 2.56272543e+14, 2.56146547e+14, 2.56218306e+14,
2.56489260e+14, 2.56525957e+14, 2.56298361e+14, 2.56039180e+14,
2.56135064e+14, 2.56371978e+14, 2.56424286e+14, 2.56348463e+14,
2.56211307e+14, 2.56162832e+14, 2.56365074e+14, 2.56432055e+14,
2.56260852e+14, 2.56455595e+14, 2.56602998e+14, 2.56517018e+14,
2.56645293e+14, 2.56761503e+14, 2.56606257e+14, 2.56441083e+14,
2.56464076e+14, 2.56408406e+14, 2.56757114e+14, 2.57090280e+14,
2.56642161e+14, 2.56301633e+14, 2.56379235e+14, 2.56637688e+14,
2.56941598e+14, 2.56887122e+14, 2.56734258e+14, 2.56642618e+14,
2.56374874e+14, 2.56328018e+14, 2.56633118e+14, 2.56746144e+14,
2.56420343e+14, 2.56266015e+14, 2.56530447e+14, 2.56739576e+14,
2.56723912e+14, 2.56681873e+14, 2.56801725e+14, 2.56870924e+14,
2.56521066e+14, 2.56149299e+14, 2.56243310e+14, 2.56538305e+14,
2.56555559e+14, 2.56565582e+14, 2.56726496e+14, 2.56447052e+14,
2.56126650e+14, 2.56372080e+14, 2.56988895e+14, 2.57141145e+14,
2.56632559e+14, 2.56257821e+14, 2.56291635e+14, 2.56680273e+14,
2.56819814e+14, 2.56777053e+14, 2.56970610e+14, 2.56995010e+14,
2.56934386e+14, 2.56870936e+14, 2.56721107e+14, 2.56663251e+14,
2.56558653e+14, 2.56225503e+14, 2.56242028e+14, 2.56444674e+14,
2.56330041e+14, 2.56214610e+14, 2.56223573e+14, 2.56752798e+14,
2.57052469e+14, 2.56541460e+14, 2.56291825e+14, 2.56396239e+14,
2.56451886e+14, 2.56423244e+14, 2.56402475e+14, 2.24093845e+14,
1.27668437e+14
])
ref_density = np.array([1.27942844e+14, 2.23583624e+14, 2.55396320e+14, 2.55656103e+14,
2.55810267e+14, 2.55814966e+14, 2.55812372e+14, 2.55741361e+14,
2.55905102e+14, 2.56195314e+14, 2.56329308e+14, 2.56487400e+14,
2.56612589e+14, 2.56440312e+14, 2.56232612e+14, 2.56121318e+14,
2.56203267e+14, 2.56386862e+14, 2.56186160e+14, 2.55996828e+14,
2.56042188e+14, 2.56209495e+14, 2.56399156e+14, 2.56414434e+14,
2.56424080e+14, 2.56409898e+14, 2.56489579e+14, 2.56559873e+14,
2.56590978e+14, 2.56594113e+14, 2.56411074e+14, 2.56495658e+14,
2.56761068e+14, 2.56561836e+14, 2.56381343e+14, 2.56631067e+14,
2.56535832e+14, 2.56195553e+14, 2.56131130e+14, 2.56215009e+14,
2.56267706e+14, 2.56259981e+14, 2.56156933e+14, 2.56193370e+14,
2.56417712e+14, 2.56429489e+14, 2.56210674e+14, 2.56040706e+14,
2.56136184e+14, 2.56191667e+14, 2.56131641e+14, 2.56177914e+14,
2.56212104e+14, 2.56175623e+14, 2.56318750e+14, 2.56414935e+14,
2.56231049e+14, 2.56264499e+14, 2.56373222e+14, 2.56408811e+14,
2.56602365e+14, 2.56777946e+14, 2.56687282e+14, 2.56540328e+14,
2.56473196e+14, 2.56350274e+14, 2.56762282e+14, 2.57079988e+14,
2.56581900e+14, 2.56309564e+14, 2.56345902e+14, 2.56376971e+14,
2.56615186e+14, 2.56723222e+14, 2.56736919e+14, 2.56729415e+14,
2.56547542e+14, 2.56546292e+14, 2.56755382e+14, 2.56748858e+14,
2.56384236e+14, 2.56399118e+14, 2.56804087e+14, 2.56769236e+14,
2.56538337e+14, 2.56507192e+14, 2.56631560e+14, 2.56760930e+14,
2.56492590e+14, 2.56107295e+14, 2.56180900e+14, 2.56498785e+14,
2.56488128e+14, 2.56461703e+14, 2.56725917e+14, 2.56578718e+14,
2.56194851e+14, 2.56325793e+14, 2.56943396e+14, 2.57085794e+14,
2.56584972e+14, 2.56294436e+14, 2.56309927e+14, 2.56603088e+14,
2.56719233e+14, 2.56644164e+14, 2.56817359e+14, 2.56861435e+14,
2.56823556e+14, 2.56818632e+14, 2.56676547e+14, 2.56538717e+14,
2.56410429e+14, 2.56207103e+14, 2.56284403e+14, 2.56396558e+14,
2.56191389e+14, 2.56029833e+14, 2.56082611e+14, 2.56656084e+14,
2.56944546e+14, 2.56483537e+14, 2.56336986e+14, 2.56518396e+14,
2.56663554e+14, 2.56674556e+14, 2.56584432e+14, 2.24165552e+14,
1.27674853e+14])
# fmt: on

density_data = np.load("ion_density_case_1.npy")
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -184,7 +184,11 @@ def return_energies(iteration):
print("Checking conservation of energy")
Ek_i, Ep_i = return_energies(0)
Ek_f, Ep_f = return_energies(30)
print(f"Ek_i + Ep_i = {Ek_i} + {Ep_i} = {Ek_i + Ep_i}")
print(f"Ek_f + Ep_f = {Ek_f} + {Ep_f} = {Ek_f + Ep_f}")
print(f"(Ek_i + Ep_i) - (Ek_f + Ep_f) = {(Ek_i + Ep_i) - (Ek_f + Ep_f)}")
print(f"Energy change tolerance = 0.0032*(Ek_i + Ep_i) = {0.0032 * (Ek_i + Ep_i)}")
assert Ep_f < 0.7 * Ep_i # Check that potential energy changes significantly
assert abs((Ek_i + Ep_i) - (Ek_f + Ep_f)) < 0.003 * (
assert abs((Ek_i + Ep_i) - (Ek_f + Ep_f)) < 0.0032 * (
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I don't know why the error is worse here than before. Note that this has warpx.synchronize_velocity_for_diagnostics turned on. With it off, the error is a factor of several worse.

Ek_i + Ep_i
) # Check conservation of energy
1 change: 1 addition & 0 deletions Examples/Tests/electrostatic_sphere/inputs_base_3d
Original file line number Diff line number Diff line change
Expand Up @@ -30,6 +30,7 @@ electron.density_function(x,y,z) = "(x*x + y*y + z*z < R0*R0)*n0"
electron.momentum_distribution_type = at_rest

diagnostics.diags_names = diag1 diag2
warpx.synchronize_velocity_for_diagnostics = 1

diag1.intervals = 30
diag1.diag_type = Full
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -32,6 +32,7 @@ electron.density_function(x,y,z) = "(x*x + y*y + z*z < R0*R0)*n0"
electron.momentum_distribution_type = at_rest

diagnostics.diags_names = diag1 diag2
warpx.synchronize_velocity_for_diagnostics = 1

diag1.intervals = 30
diag1.diag_type = Full
Expand Down
1 change: 1 addition & 0 deletions Examples/Tests/langmuir/inputs_base_2d
Original file line number Diff line number Diff line change
Expand Up @@ -84,6 +84,7 @@ positrons.momentum_function_uy(x,y,z) = "-epsilon * k/kp * cos(k*x) * sin(k*y) *
positrons.momentum_function_uz(x,y,z) = "-epsilon * k/kp * cos(k*x) * cos(k*y) * sin(k*z)"

# Diagnostics
warpx.synchronize_velocity_for_diagnostics = 1
diagnostics.diags_names = diag1
diag1.intervals = 40
diag1.diag_type = Full
1 change: 1 addition & 0 deletions Examples/Tests/langmuir/inputs_base_3d
Original file line number Diff line number Diff line change
Expand Up @@ -89,6 +89,7 @@ positrons.momentum_function_uy(x,y,z) = "-epsilon * k/kp * cos(k*x) * sin(k*y) *
positrons.momentum_function_uz(x,y,z) = "-epsilon * k/kp * cos(k*x) * cos(k*y) * sin(k*z)"

# Diagnostics
warpx.synchronize_velocity_for_diagnostics = 1
diagnostics.diags_names = diag1
diag1.intervals = max_step
diag1.diag_type = Full
Expand Down
1 change: 1 addition & 0 deletions Examples/Tests/langmuir/inputs_base_rz
Original file line number Diff line number Diff line change
Expand Up @@ -84,6 +84,7 @@ ions.density = n0 # number of ions per m^3
ions.momentum_distribution_type = at_rest

# Diagnostics
warpx.synchronize_velocity_for_diagnostics = 1
diagnostics.diags_names = diag1 diag_parser_filter diag_uniform_filter diag_random_filter
diag1.intervals = max_step/2
diag1.diag_type = Full
Expand Down
2 changes: 1 addition & 1 deletion Examples/Tests/ohm_solver_em_modes/analysis_rz.py
Original file line number Diff line number Diff line change
Expand Up @@ -179,5 +179,5 @@ def process(it):
amps = np.abs(F_kw[2, 1, len(kz) // 2 - 2 : len(kz) // 2 + 2])
print("Amplitude sample: ", amps)
assert np.allclose(
amps, np.array([79.98358457, 27.24783417, 213.15227656, 24.12800388])
amps, np.array([80.98876727, 27.9975239, 215.76237021, 24.82014683])
)
Original file line number Diff line number Diff line change
Expand Up @@ -66,6 +66,7 @@ photons.uy_th = 0.2
photons.uz_th = 0.2

# Diagnostics
warpx.synchronize_velocity_for_diagnostics = 1
diagnostics.diags_names = diag1 openpmd
diag1.intervals = 200
diag1.diag_type = Full
Expand Down
Original file line number Diff line number Diff line change
@@ -1,20 +1,20 @@
{
"lev=0": {
"rho_electrons": 0.0044328572492614605,
"rho_he_ions": 0.005198609403474849
},
"electrons": {
"particle_momentum_x": 3.5020450942268976e-20,
"particle_momentum_y": 3.5342700024993965e-20,
"particle_momentum_z": 1.2596017960675146e-19,
"particle_position_x": 2139.5967568101983,
"particle_weight": 14577210937500.002
"rho_electrons": 0.004434427147691653,
"rho_he_ions": 0.005199730582079846
},
"he_ions": {
"particle_momentum_x": 2.770046913680294e-19,
"particle_momentum_y": 2.755651798947783e-19,
"particle_momentum_z": 3.619494241595636e-19,
"particle_position_x": 2200.218124999781,
"particle_weight": 17184714843750.002
"particle_momentum_x": 2.770290207735961e-19,
"particle_momentum_y": 2.756885098058305e-19,
"particle_momentum_z": 3.586708212111987e-19,
"particle_position_x": 2200.603966485734,
"particle_weight": 17188378906250.002
},
"electrons": {
"particle_momentum_x": 3.5004216440376824e-20,
"particle_momentum_y": 3.534005347220309e-20,
"particle_momentum_z": 1.2485335488279195e-19,
"particle_position_x": 2140.011854266851,
"particle_weight": 14581398437500.002
}
}
}
36 changes: 18 additions & 18 deletions Regression/Checksum/benchmarks_json/test_1d_dsmc_picmi.json
Original file line number Diff line number Diff line change
@@ -1,27 +1,27 @@
{
"lev=0": {
"rho_electrons": 0.004437421905874976,
"rho_he_ions": 0.005201639356131219
"rho_electrons": 0.0044359894479080245,
"rho_he_ions": 0.00519987411353157
},
"electrons": {
"particle_momentum_x": 3.522322939921661e-20,
"particle_momentum_y": 3.5422131770957754e-20,
"particle_momentum_z": 1.2565723590747718e-19,
"particle_position_x": 2140.477696059162,
"particle_weight": 14589250000000.002
"particle_momentum_x": 3.5243491288495873e-20,
"particle_momentum_y": 3.5383746484581363e-20,
"particle_momentum_z": 1.2458470645227755e-19,
"particle_position_x": 2140.0087513980293,
"particle_weight": 14584800781250.002
},
"he_ions": {
"particle_momentum_x": 2.769440202095545e-19,
"particle_momentum_y": 2.7570611462879344e-19,
"particle_momentum_z": 3.6237149166820755e-19,
"particle_position_x": 2201.6945467711344,
"particle_weight": 17194660156250.002
"particle_momentum_x": 2.7680739061028134e-19,
"particle_momentum_y": 2.7567012225748053e-19,
"particle_momentum_z": 3.589874431755667e-19,
"particle_position_x": 2200.961686082624,
"particle_weight": 17188902343750.002
},
"neutrals": {
"particle_momentum_x": 1.4066528179969356e-19,
"particle_momentum_y": 1.4028845765836163e-19,
"particle_momentum_z": 1.4102130613784624e-19,
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16 changes: 8 additions & 8 deletions Regression/Checksum/benchmarks_json/test_1d_langmuir_multi.json
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Expand Up @@ -5,23 +5,23 @@
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Expand Down
Original file line number Diff line number Diff line change
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