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Lots of little fixes because I screwed up the clean_files.txt and missed unlinted completions #3530

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Run time

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Job	Run time
build-docs	21s
bats-test (ubuntu-24.04)	35s
bats-test (ubuntu-20.04)	37s
lint	41s
bats-test (macos-14)	48s
lint-differential	14s
	3m 16s