Skip to content

Fix warnings in CI#38

Merged
agdiaz merged 2 commits into
mainfrom
fix/ci-warnings
May 21, 2026
Merged

Fix warnings in CI#38
agdiaz merged 2 commits into
mainfrom
fix/ci-warnings

Conversation

@agdiaz

@agdiaz agdiaz commented May 21, 2026

Copy link
Copy Markdown
Contributor

Fix warning

Both hmmer and t-coffee must be installed by apt

=============================== warnings summary ===============================
../../../../../opt/hostedtoolcache/Python/3.12.13/x64/lib/python3.12/site-packages/b2bTools/singleSeq/PSPer/Constants.py:14
  /opt/hostedtoolcache/Python/3.12.13/x64/lib/python3.12/site-packages/b2bTools/singleSeq/PSPer/Constants.py:14: UserWarning: 
  PSPer can only run if HMMER is installed.
  Please install it from http://hmmer.org on your computer, and refer to this installation in the
     b2bTools/python/b2bTools/singleSeq/PSPer/Constant.py
  file by pointing the `hmmbuild_bin` and `hmmscan_bin` variables at the binaries.
  
    warnings.warn("""

-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
======================== 51 passed, 1 warning in 6.24s =========================

@agdiaz agdiaz merged commit b89210d into main May 21, 2026
2 checks passed
@agdiaz agdiaz deleted the fix/ci-warnings branch May 21, 2026 09:14
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant