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BiSBi @ Centre of Biological Engineering

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  1. DeepMol DeepMol Public

    DeepMol: A Machine and Deep Learning Framework for Computational Chemistry

    Python 143 13

  2. MEWpy MEWpy Public

    Metabolic Engineering Workbench

    Python 40 12

  3. propythia propythia Public

    Python generic modular semi-automated platform containing functions for the classification of proteins based on their physicochemical properties using ML.

    Jupyter Notebook 30 10

  4. troppo troppo Public

    Reconstruction algorithms for Python

    Jupyter Notebook 24 6

  5. cobamp cobamp Public

    Constraint-based modeling framework for the enumeration of pathway analysis concepts

    Jupyter Notebook 14 2

  6. ReactEA ReactEA Public

    ReactEA: Combining Evolutionary Algorithms With Reaction Rules Towards Focused Molecular Design

    Python 8 2

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Showing 10 of 29 repositories
  • DeepMol Public

    DeepMol: A Machine and Deep Learning Framework for Computational Chemistry

    Python 143 BSD-2-Clause 13 16 1 Updated Mar 24, 2025
  • diel_models Public
    Python 1 MIT 0 0 0 Updated Mar 6, 2025
  • BioCatalyzer Public

    BioCatalyzer: a rule-based tool to predict compound metabolism

    Python 6 MIT 0 1 0 Updated Feb 19, 2025
  • ReactEA Public

    ReactEA: Combining Evolutionary Algorithms With Reaction Rules Towards Focused Molecular Design

    Python 8 GPL-3.0 2 2 0 Updated Feb 12, 2025
  • deepmol_case_studies Public

    Case Studies from the DeepMol Publication

    Jupyter Notebook 7 BSD-2-Clause 1 0 0 Updated Jan 23, 2025
  • troppo Public

    Reconstruction algorithms for Python

    Jupyter Notebook 24 GPL-3.0 6 6 (1 issue needs help) 1 Updated Oct 23, 2024
  • Jupyter Notebook 0 MIT 0 0 0 Updated Aug 16, 2024
  • s2m2 Public

    Materials for the Summer School in Metabolic Modeling - 2024 edition

    Jupyter Notebook 6 GPL-2.0 2 0 0 Updated Jul 4, 2024
  • MEWpy Public

    Metabolic Engineering Workbench

    Python 40 GPL-3.0 12 6 0 Updated Jun 9, 2024
  • biomeneco Public

    A project to accelerate gap-filling of metabolic models

    1 MIT 0 0 1 Updated Dec 5, 2023

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