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/********************************************************* | ||
Model Name : toggle | ||
Filename : toggle.mod | ||
NMODL Version : 7.7.0 | ||
Vectorized : true | ||
Threadsafe : true | ||
Created : DATE | ||
Simulator : CoreNEURON | ||
Backend : C++ (api-compatibility) | ||
NMODL Compiler : VERSION | ||
*********************************************************/ | ||
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#include <math.h> | ||
#include <stdio.h> | ||
#include <stdlib.h> | ||
#include <string.h> | ||
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#include <coreneuron/gpu/nrn_acc_manager.hpp> | ||
#include <coreneuron/mechanism/mech/mod2c_core_thread.hpp> | ||
#include <coreneuron/mechanism/register_mech.hpp> | ||
#include <coreneuron/nrnconf.h> | ||
#include <coreneuron/nrniv/nrniv_decl.h> | ||
#include <coreneuron/sim/multicore.hpp> | ||
#include <coreneuron/sim/scopmath/newton_thread.hpp> | ||
#include <coreneuron/utils/ivocvect.hpp> | ||
#include <coreneuron/utils/nrnoc_aux.hpp> | ||
#include <coreneuron/utils/randoms/nrnran123.h> | ||
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namespace coreneuron { | ||
#ifndef NRN_PRCELLSTATE | ||
#define NRN_PRCELLSTATE 0 | ||
#endif | ||
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/** channel information */ | ||
static const char *mechanism_info[] = { | ||
"7.7.0", | ||
"toggle", | ||
0, | ||
"y", | ||
0, | ||
0, | ||
0 | ||
}; | ||
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/** all global variables */ | ||
struct toggle_Store { | ||
int point_type{}; | ||
int reset{}; | ||
int mech_type{}; | ||
}; | ||
static_assert(std::is_trivially_copy_constructible_v<toggle_Store>); | ||
static_assert(std::is_trivially_move_constructible_v<toggle_Store>); | ||
static_assert(std::is_trivially_copy_assignable_v<toggle_Store>); | ||
static_assert(std::is_trivially_move_assignable_v<toggle_Store>); | ||
static_assert(std::is_trivially_destructible_v<toggle_Store>); | ||
toggle_Store toggle_global; | ||
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/** all mechanism instance variables and global variables */ | ||
struct toggle_Instance { | ||
double* y{}; | ||
double* v_unused{}; | ||
double* tsave{}; | ||
const double* node_area{}; | ||
const int* point_process{}; | ||
const int* tqitem{}; | ||
toggle_Store* global{&toggle_global}; | ||
}; | ||
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/** connect global (scalar) variables to hoc -- */ | ||
static DoubScal hoc_scalar_double[] = { | ||
{nullptr, nullptr} | ||
}; | ||
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/** connect global (array) variables to hoc -- */ | ||
static DoubVec hoc_vector_double[] = { | ||
{nullptr, nullptr, 0} | ||
}; | ||
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static inline int first_pointer_var_index() { | ||
return -1; | ||
} | ||
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static inline int first_random_var_index() { | ||
return -1; | ||
} | ||
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static inline int num_net_receive_args() { | ||
return 1; | ||
} | ||
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static inline int float_variables_size() { | ||
return 3; | ||
} | ||
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static inline int int_variables_size() { | ||
return 3; | ||
} | ||
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static inline int get_mech_type() { | ||
return toggle_global.mech_type; | ||
} | ||
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static inline Memb_list* get_memb_list(NrnThread* nt) { | ||
if (!nt->_ml_list) { | ||
return nullptr; | ||
} | ||
return nt->_ml_list[get_mech_type()]; | ||
} | ||
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static inline void* mem_alloc(size_t num, size_t size, size_t alignment = 16) { | ||
void* ptr; | ||
posix_memalign(&ptr, alignment, num*size); | ||
memset(ptr, 0, size); | ||
return ptr; | ||
} | ||
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static inline void mem_free(void* ptr) { | ||
free(ptr); | ||
} | ||
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static inline void coreneuron_abort() { | ||
abort(); | ||
} | ||
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// Allocate instance structure | ||
static void nrn_private_constructor_toggle(NrnThread* nt, Memb_list* ml, int type) { | ||
assert(!ml->instance); | ||
assert(!ml->global_variables); | ||
assert(ml->global_variables_size == 0); | ||
auto* const inst = new toggle_Instance{}; | ||
assert(inst->global == &toggle_global); | ||
ml->instance = inst; | ||
ml->global_variables = inst->global; | ||
ml->global_variables_size = sizeof(toggle_Store); | ||
} | ||
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// Deallocate the instance structure | ||
static void nrn_private_destructor_toggle(NrnThread* nt, Memb_list* ml, int type) { | ||
auto* const inst = static_cast<toggle_Instance*>(ml->instance); | ||
assert(inst); | ||
assert(inst->global); | ||
assert(inst->global == &toggle_global); | ||
assert(inst->global == ml->global_variables); | ||
assert(ml->global_variables_size == sizeof(toggle_Store)); | ||
delete inst; | ||
ml->instance = nullptr; | ||
ml->global_variables = nullptr; | ||
ml->global_variables_size = 0; | ||
} | ||
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/** initialize mechanism instance variables */ | ||
static inline void setup_instance(NrnThread* nt, Memb_list* ml) { | ||
auto* const inst = static_cast<toggle_Instance*>(ml->instance); | ||
assert(inst); | ||
assert(inst->global); | ||
assert(inst->global == &toggle_global); | ||
assert(inst->global == ml->global_variables); | ||
assert(ml->global_variables_size == sizeof(toggle_Store)); | ||
int pnodecount = ml->_nodecount_padded; | ||
Datum* indexes = ml->pdata; | ||
inst->y = ml->data+0*pnodecount; | ||
inst->v_unused = ml->data+1*pnodecount; | ||
inst->tsave = ml->data+2*pnodecount; | ||
inst->node_area = nt->_data; | ||
inst->point_process = ml->pdata; | ||
inst->tqitem = ml->pdata; | ||
} | ||
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static void nrn_alloc_toggle(double* data, Datum* indexes, int type) { | ||
// do nothing | ||
} | ||
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void nrn_constructor_toggle(NrnThread* nt, Memb_list* ml, int type) { | ||
#ifndef CORENEURON_BUILD | ||
int nodecount = ml->nodecount; | ||
int pnodecount = ml->_nodecount_padded; | ||
const int* node_index = ml->nodeindices; | ||
double* data = ml->data; | ||
const double* voltage = nt->_actual_v; | ||
Datum* indexes = ml->pdata; | ||
ThreadDatum* thread = ml->_thread; | ||
auto* const inst = static_cast<toggle_Instance*>(ml->instance); | ||
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#endif | ||
} | ||
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void nrn_destructor_toggle(NrnThread* nt, Memb_list* ml, int type) { | ||
#ifndef CORENEURON_BUILD | ||
int nodecount = ml->nodecount; | ||
int pnodecount = ml->_nodecount_padded; | ||
const int* node_index = ml->nodeindices; | ||
double* data = ml->data; | ||
const double* voltage = nt->_actual_v; | ||
Datum* indexes = ml->pdata; | ||
ThreadDatum* thread = ml->_thread; | ||
auto* const inst = static_cast<toggle_Instance*>(ml->instance); | ||
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#endif | ||
} | ||
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static inline void net_send_buffering(const NrnThread* nt, NetSendBuffer_t* nsb, int type, int vdata_index, int weight_index, int point_index, double t, double flag) { | ||
int i = 0; | ||
i = nsb->_cnt++; | ||
if (i >= nsb->_size) { | ||
nsb->grow(); | ||
} | ||
if (i < nsb->_size) { | ||
nsb->_sendtype[i] = type; | ||
nsb->_vdata_index[i] = vdata_index; | ||
nsb->_weight_index[i] = weight_index; | ||
nsb->_pnt_index[i] = point_index; | ||
nsb->_nsb_t[i] = t; | ||
nsb->_nsb_flag[i] = flag; | ||
} | ||
} | ||
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static inline void net_receive_kernel_toggle(double t, Point_process* pnt, toggle_Instance* inst, NrnThread* nt, Memb_list* ml, int weight_index, double flag) { | ||
int tid = pnt->_tid; | ||
int id = pnt->_i_instance; | ||
double v = 0; | ||
int nodecount = ml->nodecount; | ||
int pnodecount = ml->_nodecount_padded; | ||
double* data = ml->data; | ||
double* weights = nt->weights; | ||
Datum* indexes = ml->pdata; | ||
ThreadDatum* thread = ml->_thread; | ||
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inst->tsave[id] = t; | ||
{ | ||
inst->y[id] = 1.0; | ||
} | ||
} | ||
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static void net_receive_toggle(Point_process* pnt, int weight_index, double flag) { | ||
NrnThread* nt = nrn_threads + pnt->_tid; | ||
Memb_list* ml = get_memb_list(nt); | ||
NetReceiveBuffer_t* nrb = ml->_net_receive_buffer; | ||
if (nrb->_cnt >= nrb->_size) { | ||
realloc_net_receive_buffer(nt, ml); | ||
} | ||
int id = nrb->_cnt; | ||
nrb->_pnt_index[id] = pnt-nt->pntprocs; | ||
nrb->_weight_index[id] = weight_index; | ||
nrb->_nrb_t[id] = nt->_t; | ||
nrb->_nrb_flag[id] = flag; | ||
nrb->_cnt++; | ||
} | ||
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void net_buf_receive_toggle(NrnThread* nt) { | ||
Memb_list* ml = get_memb_list(nt); | ||
if (!ml) { | ||
return; | ||
} | ||
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NetReceiveBuffer_t* nrb = ml->_net_receive_buffer; | ||
auto* const inst = static_cast<toggle_Instance*>(ml->instance); | ||
int count = nrb->_displ_cnt; | ||
#pragma omp simd | ||
#pragma ivdep | ||
for (int i = 0; i < count; i++) { | ||
int start = nrb->_displ[i]; | ||
int end = nrb->_displ[i+1]; | ||
for (int j = start; j < end; j++) { | ||
int index = nrb->_nrb_index[j]; | ||
int offset = nrb->_pnt_index[index]; | ||
double t = nrb->_nrb_t[index]; | ||
int weight_index = nrb->_weight_index[index]; | ||
double flag = nrb->_nrb_flag[index]; | ||
Point_process* point_process = nt->pntprocs + offset; | ||
net_receive_kernel_toggle(t, point_process, inst, nt, ml, weight_index, flag); | ||
} | ||
} | ||
nrb->_displ_cnt = 0; | ||
nrb->_cnt = 0; | ||
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NetSendBuffer_t* nsb = ml->_net_send_buffer; | ||
for (int i=0; i < nsb->_cnt; i++) { | ||
int type = nsb->_sendtype[i]; | ||
int tid = nt->id; | ||
double t = nsb->_nsb_t[i]; | ||
double flag = nsb->_nsb_flag[i]; | ||
int vdata_index = nsb->_vdata_index[i]; | ||
int weight_index = nsb->_weight_index[i]; | ||
int point_index = nsb->_pnt_index[i]; | ||
net_sem_from_gpu(type, vdata_index, weight_index, tid, point_index, t, flag); | ||
} | ||
nsb->_cnt = 0; | ||
} | ||
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/** initialize channel */ | ||
void nrn_init_toggle(NrnThread* nt, Memb_list* ml, int type) { | ||
int nodecount = ml->nodecount; | ||
int pnodecount = ml->_nodecount_padded; | ||
const int* node_index = ml->nodeindices; | ||
double* data = ml->data; | ||
const double* voltage = nt->_actual_v; | ||
Datum* indexes = ml->pdata; | ||
ThreadDatum* thread = ml->_thread; | ||
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setup_instance(nt, ml); | ||
auto* const inst = static_cast<toggle_Instance*>(ml->instance); | ||
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if (_nrn_skip_initmodel == 0) { | ||
#pragma omp simd | ||
#pragma ivdep | ||
for (int id = 0; id < nodecount; id++) { | ||
inst->tsave[id] = -1e20; | ||
int node_id = node_index[id]; | ||
double v = voltage[node_id]; | ||
#if NRN_PRCELLSTATE | ||
inst->v_unused[id] = v; | ||
#endif | ||
inst->y[id] = 0.0; | ||
net_send_buffering(nt, ml->_net_send_buffer, 0, inst->tqitem[2*pnodecount+id], 0, inst->point_process[1*pnodecount+id], nt->_t+2.0, 1.0); | ||
} | ||
} | ||
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NetSendBuffer_t* nsb = ml->_net_send_buffer; | ||
for (int i=0; i < nsb->_cnt; i++) { | ||
int type = nsb->_sendtype[i]; | ||
int tid = nt->id; | ||
double t = nsb->_nsb_t[i]; | ||
double flag = nsb->_nsb_flag[i]; | ||
int vdata_index = nsb->_vdata_index[i]; | ||
int weight_index = nsb->_weight_index[i]; | ||
int point_index = nsb->_pnt_index[i]; | ||
net_sem_from_gpu(type, vdata_index, weight_index, tid, point_index, t, flag); | ||
} | ||
nsb->_cnt = 0; | ||
} | ||
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/** register channel with the simulator */ | ||
void _toggle_reg() { | ||
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int mech_type = nrn_get_mechtype("toggle"); | ||
toggle_global.mech_type = mech_type; | ||
if (mech_type == -1) { | ||
return; | ||
} | ||
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_nrn_layout_reg(mech_type, 0); | ||
point_register_mech(mechanism_info, nrn_alloc_toggle, nullptr, nullptr, nullptr, nrn_init_toggle, nrn_private_constructor_toggle, nrn_private_destructor_toggle, first_pointer_var_index(), nullptr, nullptr, 1); | ||
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hoc_register_prop_size(mech_type, float_variables_size(), int_variables_size()); | ||
hoc_register_dparam_semantics(mech_type, 0, "area"); | ||
hoc_register_dparam_semantics(mech_type, 1, "pntproc"); | ||
hoc_register_dparam_semantics(mech_type, 2, "netsend"); | ||
hoc_register_net_receive_buffering(net_buf_receive_toggle, mech_type); | ||
set_pnt_receive(mech_type, net_receive_toggle, nullptr, num_net_receive_args()); | ||
hoc_register_net_send_buffering(mech_type); | ||
hoc_register_var(hoc_scalar_double, hoc_vector_double, NULL); | ||
} | ||
} |
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