Release v1.2.0

.Rbuildignore

@@ -1,3 +1,5 @@
+^renv$
+^renv\.lock$
 ^dv.templates\.Rproj$
 ^\.Rproj\.user$
 ^.*\.Rproj$
@@ -8,3 +10,5 @@ _pkgdown.yml
 workflows.md
 ^.lintr$
 .gitempty
+^\.lintr\.R$
+^docs$

.github/ISSUE_TEMPLATE/bug_report.yml

@@ -0,0 +1,46 @@
+name: 🐛 Bug Report
+description:  "Report a reproducible bug in the project"
+title: "[Bug]: "
+labels: ["bug", "needs-triage"]
+body:
+  - type: markdown
+    attributes:
+      value: |
+        ⚠️ **Reminder:** Everything you enter here will be publicly visible.
+        Do not include any kind of sensitive data!
+
+  - type: textarea
+    id: description
+    attributes:
+      label: Description
+      description: Clear and concise description of the bug
+      placeholder: What went wrong?
+    validations:
+      required: false
+
+  - type: textarea
+    id: steps
+    attributes:
+      label: Steps to Reproduce
+      description: Step-by-step guide to reproduce the bug
+      placeholder: |
+        1. Go to...
+        2. Run...
+        3. See error
+    validations:
+      required: false
+
+  - type: input
+    id: expected
+    attributes:
+      label: Expected Behavior
+      description: What did you expect to happen?
+    validations:
+      required: false
+
+  - type: input
+    id: environment
+    attributes:
+      label: Environment
+      description: Browser and package version
+      placeholder: e.g. Edge 1.0, dv.manager 2.0, dv.explorer.parameter 1.0

.github/ISSUE_TEMPLATE/config.yml

@@ -0,0 +1,4 @@
+contact_links:
+  - name: ⚠️ Reminder
+    url: #
+    about: Please note that all information shared in issues is public. Do not include sensitive data.

.github/ISSUE_TEMPLATE/feature_request.yml

@@ -0,0 +1,46 @@
+name: ✨ Feature Request
+description: Suggest a new feature or improvement for the project
+title: "[Feature]: "
+labels: ["enhancement", "needs-triage"]
+
+body:
+  - type: markdown
+    attributes:
+      value: |
+        ⚠️ **Reminder:** Everything you enter here will be publicly visible.
+        Do not include any kind of sensitive data!
+  - type: textarea
+    id: problem
+    attributes:
+      label: Problem Statement
+      description: What problem are you trying to solve? Why is it important?
+      placeholder: It’s frustrating when...
+    validations:
+      required: true
+
+  - type: textarea
+    id: solution
+    attributes:
+      label: Proposed Solution
+      description: How would you like this feature to work?
+      placeholder: I’d like to see...
+    validations:
+      required: true
+
+  - type: textarea
+    id: alternatives
+    attributes:
+      label: Alternatives or Workarounds
+      description: Have you tried other solutions? Why do they fall short?
+      placeholder: Other ways I tried...
+    validations:
+      required: false
+
+  - type: textarea
+    id: additional
+    attributes:
+      label: Additional Context
+      description: Any extra details, screenshots, or examples?
+      placeholder: Add any context or screenshots about the feature here.
+    validations:
+      required: false

.github/ISSUE_TEMPLATE/question.yml

@@ -0,0 +1,24 @@
+name: ❓ Question / Support
+description: Ask a question or request help using the project
+title: "[Question]: "
+labels: ["question", "discussion"]
+body:
+  - type: markdown
+    attributes:
+      value: |
+        ⚠️ **Reminder:** Everything you enter here will be publicly visible.
+        Do not include any kind of sensitive data!
+  - type: textarea
+    id: context
+    attributes:
+      label: Your Question
+      description: What would you like to know or clarify?
+      placeholder: e.g. How do I configure X? Why does Y behave like this?
+    validations:
+      required: true
+
+  - type: textarea
+    id: details
+    attributes:
+      label: Additional Context
+      description: Provide logs, screenshots, or links if helpful

.github/PULL_REQUEST_TEMPLATE.md

@@ -0,0 +1,5 @@
+Click the `Preview` tab and select a PR template:
+
+- [PR with target `main`](?expand=1&template=main-pr.md)
+- [Regular PR usually to `test`](?expand=1&template=regular-test-pr.md)
+- [Hotfix PR usually to `test`](?expand=1&template=hotfix-test-pr.md)

.github/PULL_REQUEST_TEMPLATE/hotfix-test-pr.md

@@ -0,0 +1,12 @@
+# Hotfix checklist
+
+- [ ] Bumped minor version number on both DESCRIPTION and NEWS.md
+
+- [ ] Build passes pipeline checks
+
+- [ ] The new changes do not affect the API
+
+- [ ] The new changes do not affect the documentation (including screenshots)
+
+- [ ] The new changes do not impact the QC report
+

.github/PULL_REQUEST_TEMPLATE/main-pr.md

@@ -0,0 +1,5 @@
+# Stable Release
+- [ ] Update the version number and make sure -9000 suffix is removed.
+- [ ] Merge all NEWS under a single version entry
+- [ ] Integration tests pass
+- [ ] devtools::document() is up to date

.github/PULL_REQUEST_TEMPLATE/regular-test-pr.md

@@ -0,0 +1,47 @@
+# Critical checks
+
+- [ ] Is the test version number correct (x.x.x-9000)? 
+
+- [ ] DESCRIPTION file
+
+- [ ] NEWS.md
+
+- [ ] Does the build pass?
+
+---
+
+## Documentation
+
+Does it include the following sections?
+
+- [ ] Module introduction with features
+  - [ ] (O) Screenshots
+
+- [ ] Installation details
+
+- [ ] Explanation of function arguments
+
+- [ ] Data specifications and requirements
+
+- [ ] Different possible visualizations
+
+- [ ] Are the changes/new features included in NEWS.md?
+  - [ ] (O) Screenshots
+
+- [ ] (O) Explanation of input menus
+
+- [ ] (O) Short articles on building the app, compatibility with other modules, known bugs,...
+
+---
+
+## QC Report
+
+- [ ] Does it include a QC Report with positive outcome?
+
+- [ ] Are the new features reflected accordingly in the specs?
+
+---
+
+## API conventions
+
+- [ ] Follows API convention

.github/actions/dependencies/action.yml

@@ -0,0 +1,18 @@
+---
+name: Dependencies 
+
+runs:
+  using: 'composite'
+  steps: 
+    - name: Install package dependencies 📄
+      run: |
+        # Otherwise it installs system libraries automatically
+        old_sysreqs_option <- getOption("pkg.sysreqs")
+        options(pkg.sysreqs = FALSE)
+        on.exit(options("pkg.sysreqs" = old_sysreqs_option), add = TRUE)        
+        pak::local_install_deps(".", upgrade=FALSE, ask=FALSE, dependencies = TRUE)
+        message("Message complaining about `chromium` not being installed is normal and initially can be ignored")
+        chromote::chromote_info()
+      shell: Rscript {0}
+
+

.github/workflows/check.yml

@@ -0,0 +1,33 @@
+---
+name: Check 📦
+
+on:
+  workflow_call:
+
+concurrency:
+  group: check-${{ github.event.pull_request.number || github.ref }}
+  cancel-in-progress: true
+
+jobs:
+  check:
+    name: ${{ vars.CI_IMAGE }}
+    runs-on: ubuntu-22.04
+    container:
+      image: ${{ vars.CI_IMAGE }}    
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+
+    steps:
+      - name: Checkout project ⬇️
+        uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 #@v4
+
+      - name: Install package dependencies 📄
+        uses: boehringer-ingelheim/dv.templates/.github/actions/dependencies@main     
+
+      - name: Check 📦
+        run: |
+          options(crayon.enabled = TRUE)
+          rcmdcheck::rcmdcheck(error_on = "error", args = "--no-tests")
+        shell: Rscript {0}
+
+

.github/workflows/lintr.yml

@@ -0,0 +1,41 @@
+---
+name: Lintr 🔍
+
+on:
+  workflow_call:
+    inputs:
+      lintr_error_on_lint:
+        description: Raise lintr error when lints found.
+        required: false
+        default: true
+        type: boolean
+
+concurrency:
+  group: lint-${{ github.event.pull_request.number || github.ref }}
+  cancel-in-progress: true
+
+jobs:
+  lintr:
+    name: ${{ vars.CI_IMAGE }}
+    runs-on: ubuntu-22.04
+    container:
+      image: ${{ vars.CI_IMAGE }}    
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+
+    steps:
+      - name: Checkout project ⬇️
+        uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 #@v4
+
+      - name: Install package dependencies 📄
+        uses: boehringer-ingelheim/dv.templates/.github/actions/dependencies@main     
+
+      - name: Import .lintr
+        run: |
+          wget -O .lintr https://raw.githubusercontent.com/boehringer-ingelheim/dv.templates/main/.lintr
+
+      - name: Lintr 🔍
+        run: lintr::lint_package()
+        shell: Rscript {0}
+        env:
+          LINTR_ERROR_ON_LINT: ${{ inputs.lintr_error_on_lint }}