cleaning and fix Docs

Generated docs and meantime package updates...

Main changes

• add read-the-doc & generating docs
• use pyImSegm & remove duplicated func
• update docstrings
• update CI

general update

Minor package enhancements and updating of BPDL & experiments.

Some minor changes:

• add ipynb - user gene labels & fuzzy activation function
• rename nb_jobs -> nb_workers
• move configs JSON -> YAML
• simplify parallel expts
• formating pep8
• fix NonDeamonPool
• update CI

fuzzy & deform patterns

This is functionality extension and some mean time update/bug fixing. Extending the implementation by generalizing inputs - fuzzy segmentation instead binary and compensating the internal deformation by simple registration.

Main features:

• extension for fuzzy inputs
• deformation via daemon registration
• minor bug fixing & enhancements
• meantime refactoring & code cleaning
• adding SoA methods - CanICA, MSDL

Initial release

An initial release of Binary pattern Dictionary Learning (BPDL) together with a comparison with State-of-the-Art decomposition methods applied to image domain. The project also includes useful tools for dataset handling and around real microscopy images.

Main features:

• implementation of BPDL package
• experimental setting & synthetic dataset
• comparison with NMF, SPCS, ICA, etc.
• visualisations and notebook samples

Note, this is a Phoenix version, the original v0.1 was published at CTU
see: https://gitlab.fel.cvut.cz/biomedical-imaging-algorithms/APDL