nanoQC

Quality control tools for long read sequencing data aiming to replicate some of the plots made by fastQC.

Creates dynamic plots using bokeh. For an example see here

INSTALLATION

pip install nanoQC

or

conda install -c bioconda nanoqc

USAGE

nanoQC [-h] [-v] [-o OUTDIR] fastq

positional arguments:
  fastq                 Reads data in fastq.gz format.

optional arguments:
  -h, --help            show this help message and exit
  -v, --version         Print version and exit.
  -o, --outdir OUTDIR   Specify directory in which output has to be created.