MOSuite-Nextflow

Nextflow pipeline for differential multi-omics analysis with Multi-OmicsSuite

See the website for detailed information, documentation, and examples: https://ccbr.github.io/MOSuite-Nextflow/

Quickstart

View CLI options:

mosuite-nxf --help

Initialize and run MOSuite with test data:

# initialize the project directory
mosuite-nxf init --output /data/$USER/mosuite-project

# preview the jobs that will run
mosuite-nxf run --output /data/$USER/mosuite-project \
   --mode local -profile test -preview

# launch a run on slurm
mosuite-nxf run --output /data/$USER/mosuite-project \
   --mode slurm -profile test

Help & Contributing

Come across a bug? Open an issue and include a minimal reproducible example.

Have a question? Ask it in discussions.

Want to contribute to this project? Check out the contributing guidelines.

References

View the MOSuite R package: https://github.com/CCBR/MOSuite