update make file with CI practices (#360)

* init changes

* adding directory path

Author: micahwiesner67

Makefile

@@ -94,10 +94,19 @@ test-batch: ## Run GitHub Actions workflow and then job.py for testing on Azure
 			--job_id="$(JOB)"
 
 test: ## Run unit tests for the CFAEpiNow2Pipeline R package
-	Rscript -e "testthat::test_local()"
+	$(CNTR_MGR) run --mount type=bind,source=$(PWD),target=/cfa-epinow2-pipeline -it \
+	--env-file .env \
+	--rm $(REGISTRY)$(IMAGE_NAME):$(TAG) \
+	Rscript -e "testthat::test_local('cfa-epinow2-pipeline')"
 
 document: ## Generate roxygen2 documentation for the CFAEpiNow2Pipeline R package
-	Rscript -e "roxygen2::roxygenize()"
+	$(CNTR_MGR) run --mount type=bind,source=$(PWD),target=/cfa-epinow2-pipeline -it \
+	--env-file .env \
+	--rm $(REGISTRY)$(IMAGE_NAME):$(TAG) \
+	Rscript -e "roxygen2::roxygenize('cfa-epinow2-pipeline')"
 
 check: ## Perform R CMD check for the CFAEpiNow2Pipeline R package
-	Rscript -e "rcmdcheck::rcmdcheck()"
+	$(CNTR_MGR) run --mount type=bind,source=$(PWD),target=/cfa-epinow2-pipeline -it \
+	--env-file .env \
+	--rm $(REGISTRY)$(IMAGE_NAME):$(TAG) \
+	Rscript -e "rcmdcheck::rcmdcheck('cfa-epinow2-pipeline')"

NEWS.md

@@ -1,6 +1,7 @@
 # CFAEpiNow2Pipeline v0.2.0
 
 ## Features
+* Updating make commands to be called from docker image locally
 * Updating pre-commit to block specific test.parquet file
 * Scheduling `make run-prod` on Github Actions Wednesdays at 8 AM ET
 * Adds facility active proportion information for config runs and re-runs