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1. cidc-ngs-pipeline-api cidc-ngs-pipeline-api Public

   Specifications and documentation related to CIMAC-CIDC NGS pipelines: WES, RNAseq, TCRseq, ATACseq

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2. cidc-cli cidc-cli Public

   Command line tool for transferring data files to/from the CIDC.

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3. cidc-schemas cidc-schemas Public

   CIDC Metadata Schemas

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4. cidc-pipelines cidc-pipelines Public archive

   A repo for tracking the versions and composition of CIDC pipelines

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5. cidc-pipeline-prototype cidc-pipeline-prototype Public

   A placeholder pipeline written in Snakemake.

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6. cidc-utils cidc-utils Public archive

   A simple utility package for the CIDC tools, provides convenient shortcut methods for some of the common tasks.

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