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run any fluxnet site (Thanhthanh project) #1640

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9091236
wip
AlexisRenchon Feb 12, 2026
871f977
time constraints updated
ThanhNguyen428 Mar 5, 2026
887c7aa
added a test for a fluxnet site hosted on central
ThanhNguyen428 Mar 5, 2026
bdad4b4
i had a typo :(
ThanhNguyen428 Mar 5, 2026
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4 changes: 4 additions & 0 deletions .buildkite/pipeline.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -87,6 +87,10 @@ steps:
command: "julia --color=yes --project=.buildkite experiments/integrated/fluxnet/run_fluxnet.jl US-Ha1"
artifact_paths: "experiments/integrated/fluxnet/US-Ha1/out/*png"

- label: "emr_test"
command: "julia --color=yes --project=.buildkite experiments/integrated/fluxnet/run_any_fluxnet.jl AU-Emr"
artifact_paths: "experiments/integrated/fluxnet/AU-Emr/out/*png"

- label: "ozark_pft"
command: "julia --color=yes --project=.buildkite experiments/integrated/fluxnet/ozark_pft.jl"
artifact_paths: "experiments/integrated/fluxnet/US-MOz/pft/out/*png"
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15 changes: 9 additions & 6 deletions Artifacts.toml
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Expand Up @@ -50,17 +50,17 @@ git-tree-sha1 = "136f1db3ed969614fb589c5250545a3ed1e8aaab"
url = "https://caltech.box.com/shared/static/of1admpndmikoumtgk5j3yvt92v71awk.gz"

["clm_data_0.9x1.25"]
git-tree-sha1 = "283c62220fca8c4afe36a62348d3e9a159af2ee9"
git-tree-sha1 = "38488be5dd476890deb6fbd2b26e3e1cee2d449e"

[["clm_data_0.9x1.25".download]]
sha256 = "88d5899a729de800017a74bd8a7278582c2c55c0d8730a529bae384425d70e4e"
url = "https://caltech.box.com/shared/static/mxs3l1c1dppjwy81assk8w8ofn9d70pu.gz"
sha256 = "cb5ead78868243879261d26cbb42d665bfd98135ebbebc052487d4d13ebf3a98"
url = "https://caltech.box.com/shared/static/6ms2qzyiekorksewmfyie6mbonlq5ctp.gz"
["clm_data_0.125x0.125"]
git-tree-sha1 = "6284ddefbc7937d9c1fb68fa731ff3f00b68e917"
git-tree-sha1 = "b8816f0af2c6d182111a156c3b8eed2ed83efea7"

[["clm_data_0.125x0.125".download]]
sha256 = "8d2a61baad53346515f4a66c4342f8aafce37ca9520020c17f99cc4f4aa98b15"
url = "https://caltech.box.com/shared/static/uteaw1l6fg7wmwhb3ey1c0jq4r8vg0ts.gz"
sha256 = "993b5b97b6ec22ec484db4e523b65a231d736ead8b5e0759ad3abd00050bb58c"
url = "https://caltech.box.com/shared/static/fx9138ysguyg4g65l4tvibbk16er0nqo.gz"
[era5_land_forcing_data2008]
git-tree-sha1 = "93d2e93f491e77cb8fba2a1b8b3946f38bde469e"
[era5_land_forcing_data2008_lowres]
Expand Down Expand Up @@ -195,3 +195,6 @@ git-tree-sha1 = "c35ba0e899040cb8153226ab751f69100f475d39"
[[mizoguchi_soil_freezing_data.download]]
sha256 = "0027cc080ba45ba33dc790b176ec2854353ce7dce4eae4bef72963b0dd944e0b"
url = "https://caltech.box.com/shared/static/tn1bnqjmegyetw5kzd2ixq5pbnb05s3u.gz"

[fluxnet2015]
git-tree-sha1 = "94d6eb8e3bc5fc361a43597ab4fb6941bdbe2850"
6 changes: 4 additions & 2 deletions docs/src/tutorials/calibration/perfect_model_site_level_calibration.jl
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Expand Up @@ -78,8 +78,10 @@ site_ID_val = FluxnetSimulations.replace_hyphen(site_ID)
(; atmos_h) = FluxnetSimulations.get_fluxtower_height(FT, Val(site_ID_val))

# Get maximum simulation start and end dates
(start_date, stop_date) =
FluxnetSimulations.get_data_dates(site_ID, time_offset)
(data_start, data_stop) = FluxnetSimulations.get_data_dates(site_ID, time_offset)
# Constrain to 2000-2020 (MODIS LAI availability) and skip first day
# so TimeVaryingInputs have data before t=0 even if initial rows are missing
start_date = max(data_start + Day(1), DateTime(2000, 1, 1))
stop_date = DateTime(2010, 4, 1, 6, 30) # Set the stop date manually
Δt = 450.0 # seconds

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7 changes: 5 additions & 2 deletions docs/src/tutorials/integrated/changing_snowy_land_parameterizations.jl
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Expand Up @@ -53,8 +53,11 @@ site_ID_val = FluxnetSimulations.replace_hyphen(site_ID);
(; atmos_h) = FluxnetSimulations.get_fluxtower_height(FT, Val(site_ID_val));
# Set a start and stop date of the simulation in UTC, as well as
# a timestep in seconds
(start_date, stop_date) =
FluxnetSimulations.get_data_dates(site_ID, time_offset);
(data_start, data_stop) = FluxnetSimulations.get_data_dates(site_ID, time_offset);
# Constrain to 2000-2020 (MODIS LAI availability) and skip first day
# so TimeVaryingInputs have data before t=0 even if initial rows are missing
start_date = max(data_start + Day(1), DateTime(2000, 1, 1))
stop_date = min(data_stop, DateTime(2020, 12, 31, 23, 59, 59))
Δt = 450.0;

# Setup the domain for the model. This corresponds to
Expand Down
7 changes: 5 additions & 2 deletions docs/src/tutorials/integrated/fluxnet_data.jl
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Expand Up @@ -48,8 +48,11 @@ site_ID_val = FluxnetSimulations.replace_hyphen(site_ID)

# It is also useful to know the bounds of the data,
# in UTC, to use as the start and stop date of the simulation.
(start_date, stop_date) =
FluxnetSimulations.get_data_dates(site_ID, time_offset)
(data_start, data_stop) = FluxnetSimulations.get_data_dates(site_ID, time_offset)
# Constrain to 2000-2020 (MODIS LAI availability) and skip first day
# so TimeVaryingInputs have data before t=0 even if initial rows are missing
start_date = max(data_start + Day(1), DateTime(2000, 1, 1))
stop_date = min(data_stop, DateTime(2020, 12, 31, 23, 59, 59))

# Now we can construct the forcing objects. Under the hood, this
# function finds the local path to the fluxtower data (and downloads it
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7 changes: 5 additions & 2 deletions docs/src/tutorials/integrated/snowy_land_fluxnet_tutorial.jl
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Expand Up @@ -48,8 +48,11 @@ site_ID_val = FluxnetSimulations.replace_hyphen(site_ID);
(; atmos_h) = FluxnetSimulations.get_fluxtower_height(FT, Val(site_ID_val));
# Set a start and stop date of the simulation in UTC, as well as
# a timestep in seconds
(start_date, stop_date) =
FluxnetSimulations.get_data_dates(site_ID, time_offset)
(data_start, data_stop) = FluxnetSimulations.get_data_dates(site_ID, time_offset);
# Constrain to 2000-2020 (MODIS LAI availability) and skip first day
# so TimeVaryingInputs have data before t=0 even if initial rows are missing
start_date = max(data_start + Day(1), DateTime(2000, 1, 1))
stop_date = min(data_stop, DateTime(2020, 12, 31, 23, 59, 59))
Δt = 450.0;

# Setup the domain for the model. This corresponds to
Expand Down
7 changes: 5 additions & 2 deletions experiments/integrated/fluxnet/ozark_pft.jl
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Expand Up @@ -103,8 +103,11 @@ prognostic_land_components = (:canopy, :soil, :soilco2)

# Set up the timestepping information for the simulation
dt = Float64(450) # 7.5 minutes
(start_date, stop_date) =
FluxnetSimulations.get_data_dates(site_ID, time_offset)
(data_start, data_stop) = FluxnetSimulations.get_data_dates(site_ID, time_offset)
# Constrain to 2000-2020 (MODIS LAI availability) and skip first day
# so TimeVaryingInputs have data before t=0 even if initial rows are missing
start_date = max(data_start + Day(1), DateTime(2000, 1, 1))
stop_date = min(data_stop, DateTime(2020, 12, 31, 23, 59, 59))
# Define the PFT land cover percentages for the Ozark site. Currently we only
# use the dominant PFT, which for Ozark is deciduous broadleaf temperate trees.
pft_pcts = [
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7 changes: 5 additions & 2 deletions experiments/integrated/fluxnet/ozark_pmodel.jl
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Expand Up @@ -95,8 +95,11 @@ dt = Float64(450) # 7.5 minutes

# This reads in the data from the flux tower site and creates
# the atmospheric and radiative driver structs for the model
(start_date, stop_date) =
FluxnetSimulations.get_data_dates(site_ID, time_offset)
(data_start, data_stop) = FluxnetSimulations.get_data_dates(site_ID, time_offset)
# Constrain to 2000-2020 (MODIS LAI availability) and skip first day
# so TimeVaryingInputs have data before t=0 even if initial rows are missing
start_date = max(data_start + Day(1), DateTime(2000, 1, 1))
stop_date = min(data_stop, DateTime(2020, 12, 31, 23, 59, 59))
# This reads in the data from the flux tower site and creates
# the atmospheric and radiative driver structs for the model
(; atmos, radiation) = FluxnetSimulations.prescribed_forcing_fluxnet(
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7 changes: 5 additions & 2 deletions experiments/integrated/fluxnet/ozark_soilsnow.jl
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Expand Up @@ -97,8 +97,11 @@ dt = Float64(900)

# This reads in the data from the flux tower site and creates
# the atmospheric and radiative driver structs for the model
(start_date, stop_date) =
FluxnetSimulations.get_data_dates(site_ID, time_offset)
(data_start, data_stop) = FluxnetSimulations.get_data_dates(site_ID, time_offset)
# Constrain to 2000-2020 (MODIS LAI availability) and skip first day
# so TimeVaryingInputs have data before t=0 even if initial rows are missing
start_date = max(data_start + Day(1), DateTime(2000, 1, 1))
stop_date = min(data_stop, DateTime(2020, 12, 31, 23, 59, 59))

# Height of sensor on flux tower
atmos_h = FT(32)
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