changelog conflict

Author: mathiasbio

BALSAMIC/constants/workflow_profile/config.yaml

@@ -99,7 +99,7 @@ set-resources:
     runtime: 360
   bedtools_pad_bedfile:
     mem_mb: min(230000, 1000 * attempt)
-    runtime: 20
+    runtime: 40
   vardict_sort:
     mem_mb: min(230000, 15000 * attempt)
     runtime: 30
@@ -200,10 +200,10 @@ set-resources:
     runtime: 350
     mem_mb: min(230000, 40000 * attempt)
   bedtools_sort_and_merge:
-    runtime: 20
+    runtime: 40
     mem_mb: min(230000, 400 * attempt)
   extend_short_bedregions:
-    runtime: 20
+    runtime: 40
     mem_mb: min(230000, 400 * attempt)
   create_coverage:
     runtime: 360

BALSAMIC/models/sbatchsubmitter.py

@@ -71,7 +71,7 @@ def _build_sbatch_header(self) -> str:
             f"#SBATCH --output={self.log_path}/BALSAMIC_snakemake_submit.{self.case_id}.%j.out",
             f"#SBATCH --error={self.log_path}/BALSAMIC_snakemake_submit.{self.case_id}.%j.err",
             "#SBATCH --ntasks=1",
-            "#SBATCH --mem=5G",
+            "#SBATCH --mem=500M",
             f"#SBATCH --time={self.max_run_hours}:00:00",
             f"#SBATCH --qos={self.qos}",
             "#SBATCH --cpus-per-task=1",

CHANGELOG.rst

@@ -7,6 +7,8 @@ Added:
 Changed:
 ^^^^^^^^
 * Updated sentieon to version 202503.01
+* increased runtime for a couple of small rules https://github.com/Clinical-Genomics/BALSAMIC/pull/1641
+* decreased memory for headjobs to 500mb https://github.com/Clinical-Genomics/BALSAMIC/pull/1641
 
 Removed:
 ^^^^^^^^