Skip to content

8.1.0
Compare
Choose a tag to compare
@jemten jemten released this 04 Feb 09:34
· 2432 commits to master since this release
v8.1.0
2776d7c
  • STAR aligns sample fastq files with the same sequnece mode (eg. single-end or paired-end) within one job
  • Dropped option to run sambamba markduplicates for RNA
  • Added SMNCopyNumberCaller to MIP for SMN calling with WGS data
  • Added downlod of vcf2cytosure blacklist file for grch37

CLI

  • New CLI option for picard markduplicates optical duplicate distance. Default: 2500
  • Removed sambamba markduplicates CLI options from RNA
  • Removed CLI option markduplicates_no_bam_to_cram
  • New analysis recipe option for smncopynumbercaller
  • New option for vcf2cytosure "--vcf2cytosure_blacklist"

Tools

  • vcf2cytosure: 0.4.3 -> 0.5.0
  • Arriba: 1.1.0
Assets 2
Loading