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Pull requests: Clinical-Genomics/cg

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Pull requests list

Upload nallo to gens
#4913 opened Feb 20, 2026 by mogmi • Draft
15 tasks
1
1
Migrate balsamic umi
#4912 opened Feb 20, 2026 by islean • Draft
15 tasks
1
1
Adding cache_version to balsamic
#4911 opened Feb 20, 2026 by RasmusBurge-CG Loading…
15 tasks
1
Simplify archiving
#4908 opened Feb 19, 2026 by islean Loading…
15 tasks
1
3
Add(Onboard demultiplexing) Support onboard demultiplexing
#4901 opened Feb 18, 2026 by Vince-janv Loading…
2
Update rna uploads
#4897 opened Feb 17, 2026 by RasmusBurge-CG • Draft
15 tasks
1
DEV - Switch reference genome to hg38 for raredisease
#4871 opened Feb 4, 2026 by diitaz93 • Draft
15 tasks
3
Update Nallo to 0.10.2
#4868 opened Feb 3, 2026 by fellen31 Loading…
1 of 15 tasks
3
Patch post processing error raising
#4849 opened Jan 22, 2026 by islean Loading…
15 tasks
3
Nallo: add sambamba depth output as deliverable
#4843 opened Jan 20, 2026 by peterpru Loading…
1 of 15 tasks
@peterpru
2
Feat(taxprofiler):Remove _pe suffix from deliverables
#4839 opened Jan 19, 2026 by sofstam Loading…
15 tasks
2
Add hasta2 login deploy workflow
#4825 opened Jan 14, 2026 by ahdamin Loading…
@ahdamin
2
Switch from abstract classes to protocols with generic types
#4797 opened Dec 22, 2025 by mogmi • Draft
15 tasks
2
Create analysis in Trailblazer first for raw-data
#4793 opened Dec 19, 2025 by mogmi • Draft
15 tasks
1
remove workflow_bin_path for taxprofiler
#4787 opened Dec 17, 2025 by RasmusBurge-CG Loading…
1 of 15 tasks
1
Remove workflow_bin_path
#4786 opened Dec 16, 2025 by RasmusBurge-CG Loading…
15 tasks
3
update variant catalog path in raredisease bundle
#4781 opened Dec 16, 2025 by ramprasadn Loading…
15 tasks
1
Add parent model for nextflow configs
#4773 opened Dec 12, 2025 by kedhammar • Draft
15 tasks
@diitaz93 @kedhammar
2
possible-refactor
#4711 opened Nov 13, 2025 by RasmusBurge-CG Loading…
15 tasks
1
Test call to config case fails
#4710 opened Nov 13, 2025 by mogmi Loading…
15 tasks
1
Add analysis cascading
#4680 opened Oct 30, 2025 by islean • Draft
15 tasks
4
Use other source when source is other
#4667 opened Oct 23, 2025 by islean • Draft
15 tasks
2
Fix the tests and coverage badge
#4646 opened Oct 7, 2025 by dnil Loading…
5 of 9 tasks
1
Make RNAFUSION samples be always tumour
#4537 opened Aug 1, 2025 by diitaz93 • Draft
2 of 12 tasks
2
23
Filter cancelled Samples for Tomte dna upload
#4498 opened Jul 8, 2025 by ahdamin Loading…
15 tasks
1
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