Skip to content

General report updates, highlight case search results, logout fix

Latest
Latest
Compare
Choose a tag to compare
@dnil dnil released this 27 May 11:17
· 8 commits to main since this release
v4.102
1c36f2e
This commit was created on GitHub.com and signed with GitHub’s verified signature.
GPG key ID: B5690EEEBB952194
Verified
Learn about vigilant mode.

[4.102]

Added

  • ClinVar data with link to ClinVar for variants present on the general case report (#5478)
  • Customise Scout instance color and name, by adding INSTANCE_NAME and INSTANCE_COLOR parameters in the app config file (#5479)
  • Display local archived frequencies on general case report (#5492)

Changed

  • Refactored and simplified code that fetches case's genome build (#5443)
  • On caseS page, dim cases only included from the always display cases with status option (#5464)
  • Reuse the variant frequencies table from variant page on case reports (#5478)
  • Loading of outliers files (Fraser and Outrider) do not raise error when path to these files is missing or wrong, just a warning (#5486)
  • Updated libraries on uv lock file (#5495)

Fixed

  • Fix long STR variant pinned display on case page (#5455)
  • Variant page crashing when Loqusdb instance is chosen on institute settings but is not found at the given URL (#5447)
  • Show assignees in case list when user ID is different from email (#5460)
  • When removing a germline variant from a ClinVar submission, make sure to remove also its associated observations from the database (#5463)
  • Chanjo2 genes full coverage check when variant has no genes (#5468)
  • Full Flask user logout blocked by session clear (#5470)
  • SV page UCSC link for breakpoints did not detect genome build 38 (#5489)
  • HPO term deep link URL updated to a working one (#5488)
  • Add str_trid as a sorting criterion when selecting STRs. This fixes the sort order problem of STRs from cases with genome build 38 (#5491)
  • Always use GitHub original for igv.js genomes.json config - it is intended as official backup URL already (#5496)
  • Update igv.js to v3.3.0 (#5496)
  • Introduced a function that checks redirect URLs to avoid redirection to external sites (#5458)
  • Loading of missing outliers files should also not raise error if key exists but is unset (#5497)
  • Do not add null references to HPO-associated genes when parsing errors occur (#5472)
  • Possibility to change user immediately after logging out from Google Oauth or Keycloak (#5493)
  • Trust hgnc_id for unique aliases for HPO-associated genes (#5498)
Assets 2
Loading