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VTK 9.4.1 #93

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VTK 9.4.1
cwant Mar 26, 2025
7a729f7
Refactored a bit. Move deps to build deps. Use Numpy only
ccoulombe Mar 27, 2025
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74 changes: 74 additions & 0 deletions easybuild/easyconfigs/v/VTK/VTK-9.4.1-GCC-12.3.0.eb
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easyblock = 'CMakeMake'

name = 'VTK'
version = '9.4.1'

homepage = 'http://www.vtk.org'
description = """The Visualization Toolkit (VTK) is an open-source, freely available software system for
3D computer graphics, image processing and visualization. VTK consists of a C++ class library and several
interpreted interface layers including Tcl/Tk, Java, and Python. VTK supports a wide variety of visualization
algorithms including: scalar, vector, tensor, texture, and volumetric methods; and advanced modeling techniques
such as: implicit modeling, polygon reduction, mesh smoothing, cutting, contouring, and Delaunay triangulation."""

toolchain = {'name': 'GCC', 'version': '12.3.0'}

source_urls = ['https://www.vtk.org/files/release/%(version_major_minor)s']
sources = [
SOURCE_TAR_GZ,
'%(name)sData-%(version)s.tar.gz',
]
checksums = [
{'VTK-9.4.1.tar.gz': 'c253b0c8d002aaf98871c6d0cb76afc4936c301b72358a08d5f3f72ef8bc4529'},
{'VTKData-9.4.1.tar.gz': '188ef68f3decea56c7218877598ec0a84d838d35ff5d4f688d8867986c743114'},
]

multi_deps = { 'Python': ['3.13', '3.12', '3.11'] }

multi_deps_load_default = False

modextrapaths = {'EBPYTHONPREFIXES': ['']}

builddependencies = [('CMake', '3.27.7')]

dependencies = [
('SciPy-Stack', '2024b'),
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We should not depend on Scipy-stack directly.

Better to have flexibility and have it in the modluafooter if required. But I think in this case we can remove the scipy-stack and simply use the numpy module as builddep

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@ccoulombe Interesting, I didn't know that there was a numpy module.

I did build it by first moving pretty every dependency to the builddeps as suggested, but it fails on the import vtk sanity check for Python 3.13 (the first version it tries):

== 2025-03-27 15:06:14,134 build_log.py:171 ERROR EasyBuild crashed with an error (at easybuild/tools/build_log.py:111 in caller_info): Sanity check failed: sanity check command python -c 'import vtk' exited with code 1 (output: Traceback (most recent call last):
  File "<string>", line 1, in <module>
    import vtk
  File "/home/cwant/.local/easybuild/software/2023/x86-64-v3/Compiler/gcc12/vtk/9.4.1/lib/python3.13/site-packages/vtk.py", line 26, in <module>
    from vtkmodules.vtkPythonContext2D import *
ImportError: /home/cwant/.local/easybuild/software/2023/x86-64-v3/Compiler/gcc12/vtk/9.4.1/lib/libvtkWrappingPythonCore3.11-9.4.so.1: undefined symbol: _Py_HashPointer
) (at easybuild/framework/easyblock.py:3674 in _sanity_check_step)

Is it interesting that it's an issue with 3.11 stuff?

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Ishh, that's not good. So I guess we were wrong, and that dirty bug is not resolved after all :( :(

('HDF5', '1.14.2'),
('netCDF', '4.9.2'),
]

separate_build_dir = True

configopts = ' '.join([
# Third party modules
"-DVTK_USE_SYSTEM_LZMA=ON",
"-DVTK_USE_SYSTEM_HDF5=ON",
"-DVTK_USE_SYSTEM_NETCDF=ON",
# Python
"-DVTK_WRAP_PYTHON=ON",
"-DVTK_PYTHON_VERSION=3",
"-DPYTHON_INCLUDE_DIR=$EBROOTPYTHON/include/python%(pyshortver)s",
"-DPYTHON_LIBRARY=$EBROOTPYTHON/lib/libpython%%(pyshortver)s.%s" % SHLIB_EXT,
"-DPython3_EXECUTABLE=$EBROOTPYTHON/bin/python",
# Other
"-DCMAKE_INSTALL_LIBDIR=lib",
])

preinstallopts = "export PYTHONPATH=%(installdir)s/lib/python%(pyshortver)s/site-packages:$PYTHONPATH && "

postinstallcmds = [
'/cvmfs/soft.computecanada.ca/easybuild/bin/setrpaths.sh --path %(installdir)s/lib --add_path %(installdir)s/lib --any_interpreter',
] + [
"mkdir -p %(installdir)s/lib/python{py}/site-packages/{dist}-%(version)s.dist-info && echo -e 'Metadata-Version: 2.3\nName: {dist}\nVersion: %(version)s' > %(installdir)s/lib/python{py}/site-packages/{dist}-%(version)s.dist-info/METADATA".format(py=py, dist=name.lower())
for py in multi_deps['Python']
]

sanity_check_paths = {
'files': ['bin/vtk%s-%%(version_major_minor)s' % x for x in
['WrapJava', 'ParseJava', 'WrapPythonInit', 'WrapPython', 'WrapHierarchy']] +
['bin/vtkpython'],
'dirs': ['lib/python%(pyshortver)s/site-packages/', 'include/vtk-%(version_major_minor)s'],
}

sanity_check_commands = [('python', "-c 'import %(namelower)s'")]

moduleclass = 'vis'
68 changes: 68 additions & 0 deletions easybuild/easyconfigs/v/VTK/VTK-9.4.1-gompi-2023a-mpi.eb
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easyblock = 'CMakeMake'

name = 'VTK'
version = '9.4.1'
versionsuffix = '-mpi'

homepage = 'http://www.vtk.org'
description = """The Visualization Toolkit (VTK) is an open-source, freely available software system for
3D computer graphics, image processing and visualization. VTK consists of a C++ class library and several
interpreted interface layers including Tcl/Tk, Java, and Python. VTK supports a wide variety of visualization
algorithms including: scalar, vector, tensor, texture, and volumetric methods; and advanced modeling techniques
such as: implicit modeling, polygon reduction, mesh smoothing, cutting, contouring, and Delaunay triangulation."""

toolchain = {'name': 'gompi', 'version': '2023a'}
toolchainopts = {'usempi': True}

source_urls = ['https://www.%(namelower)s.org/files/release/%(version_major_minor)s']
sources = [
SOURCE_TAR_GZ,
'%(name)sData-%(version)s.tar.gz',
]
checksums = [
{'VTK-9.4.1.tar.gz': 'c253b0c8d002aaf98871c6d0cb76afc4936c301b72358a08d5f3f72ef8bc4529'},
{'VTKData-9.4.1.tar.gz': '188ef68f3decea56c7218877598ec0a84d838d35ff5d4f688d8867986c743114'},
]

builddependencies = [
('CMake', '3.27.7', '', SYSTEM),
]
dependencies = [
('SciPy-Stack', '2024b', '', SYSTEM),
('HDF5', '1.14.2'),
('netCDF', '4.9.2'),
]
multi_deps = {'Python': ['3.13', '3.12', '3.11']}

configopts = "-DVTK_USE_SYSTEM_LZMA=ON -DVTK_USE_SYSTEM_HDF5=ON -DVTK_USE_SYSTEM_NETCDF=ON -DVTK_WRAP_PYTHON=ON -DVTK_PYTHON_VERSION=3 -DPYTHON_INCLUDE_DIR=$EBROOTPYTHON/include/python%(pyshortver)s -DPYTHON_LIBRARY=$EBROOTPYTHON/lib/libpython%(pyshortver)s.so -DPython3_EXECUTABLE=$EBROOTPYTHON/bin/python -DCMAKE_INSTALL_LIBDIR=lib -DVTK_Group_MPI:BOOL=ON"


preinstallopts = "export PYTHONPATH=%(installdir)s/lib/python%(pyshortver)s/site-packages:$PYTHONPATH && "

postinstallcmds = [
"/cvmfs/soft.computecanada.ca/easybuild/bin/setrpaths.sh --path %(installdir)s/lib --add_path %(installdir)s/lib --any_interpreter",
"""mkdir -p %(installdir)s/lib/python3.11/site-packages/%(namelower)s-%(version)s.dist-info && echo -e 'Metadata-Version: 2.3
Name: %(namelower)s
Version: %(version)s' > %(installdir)s/lib/python3.11/site-packages/%(namelower)s-%(version)s.dist-info/METADATA""",
"""mkdir -p %(installdir)s/lib/python3.12/site-packages/%(namelower)s-%(version)s.dist-info && echo -e 'Metadata-Version: 2.3
Name: %(namelower)s
Version: %(version)s' > %(installdir)s/lib/python3.12/site-packages/%(namelower)s-%(version)s.dist-info/METADATA""",
"""mkdir -p %(installdir)s/lib/python3.13/site-packages/%(namelower)s-%(version)s.dist-info && echo -e 'Metadata-Version: 2.3
Name: %(namelower)s
Version: %(version)s' > %(installdir)s/lib/python3.13/site-packages/%(namelower)s-%(version)s.dist-info/METADATA""",
]
multi_deps_load_default = False

sanity_check_paths = {
'files': ['bin/vtkWrapJava-%(version_major_minor)s', 'bin/vtkParseJava-%(version_major_minor)s', 'bin/vtkWrapPythonInit-%(version_major_minor)s', 'bin/vtkWrapPython-%(version_major_minor)s', 'bin/vtkWrapHierarchy-%(version_major_minor)s', 'bin/vtkpython'],
'dirs': ['lib/python%(pyshortver)s/site-packages/', 'include/%(namelower)s-%(version_major_minor)s', 'lib/python%(pyshortver)s/site-packages'],
}

sanity_check_commands = [
('python', "-c 'import %(namelower)s'"),
"""if [ -n "$(find %(installdir)s/lib*/python*/site-packages -name '*.egg*')" ] ; then echo 'Found .egg file, please use pip. See https://github.com/ComputeCanada/software-stack/issues/137' ; exit 1; else exit 0; fi""",
]

modextrapaths = {'EBPYTHONPREFIXES': ['']}

moduleclass = 'vis'