Openfold

Team No: 2

Team Members:

• 2020101132, Mugundan Kottur Suresh
• 2021121003, Manav Chaudhary

Youtube Video Link

Problem Statement

Predicting a 3-dimensional structure of a protein molecule from its amino acid sequence with the help of machine learning.

Prerequisites

• Have Docker installed on your machine. If you don't have Docker installed, you can find instructions for your operating system here.
• Have CUDA installed on your machine. If you don't have CUDA installed, you can find instructions for your operating system here.
• Have Python 3.9 installed on your machine. If you don't have Python 3.9 installed, you can find instructions for your operating system here.
• Install streamlit, py3Dmol and requests using pip. If you don't have pip installed, you can find instructions for your operating system here.

How to Run

• Clone this repository
• Navigate to the Docker Backend directory of this repository
• Run docker build -t openfold . to build the Docker image
• Run docker run -d -p 8000:8000 openfold to create and run a container from the image
• Navigate to the Frontend directory and run streamlit run frontend.py to run the frontend