Enh/automatrix_mri2cbct

[algadm]

Hello @allemangD,

This PR introduces several new features, UI improvements, and fixes across the Automatrix and MRI2CBCT modules.

➕ Added functionalities

• Automatrix
  • Now supports applying transform matrices to .mrk.json landmark files.
  • Output filename generation is more flexible and customizable.
• MRI2CBCT
  • Added support for bilateral cropping of MRI and CBCT scans.

    Note: Additional bilateral-related logic was implemented but is too detailed to cover fully here.

  • Resampling improvements for MRI:
    • Added left-side padding where appropriate.
    • Fixed centering behavior for better anatomical consistency.

🛠️ Fixes

Added some missing files inside of ImportLibrary.cmake for the MRI2CBCT approximation code to work.

🎨 Other Updates

• UI improvements in MRI2CBCT for better clarity and scalability as more tools are added.
• Updated logos for both Automatrix and MRI2CBCT.
• Revised README to reflect new features and workflow changes.

[allemangD]

I've verified that the Python environment is configured correctly, and CMake package generation succeeds so publication to the Extensions Index should be fine. I did not run the module itself as I don't have suitable hardware at the moment. I'll merge and keep an eye on the dashboard in case it reports errors.

https://slicer.cdash.org/index.php?project=SlicerStable&filtercount=1&showfilters=1&field1=buildname&compare1=63&value1=AutomatedDentalTools

Note the dashboard already reports tests failing. Those same tests fail for me locally, so it doesn't seem this PR is changing anything.