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@DIAGNijmegen

Diagnostic Image Analysis Group

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  1. neural-odes-segmentation neural-odes-segmentation Public

    Neural Ordinary Differential Equations for Semantic Segmentation of Individual Colon Glands

    Python 110 28

  2. StreamingCNN StreamingCNN Public

    To train deep convolutional neural networks, the input data and the activations need to be kept in memory. Given the limited memory available in current GPUs, this limits the maximum dimensions of …

    Jupyter Notebook 100 24

  3. pathology-whole-slide-data pathology-whole-slide-data Public

    A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.

    Python 99 30

  4. pathology-streaming-pipeline pathology-streaming-pipeline Public

    Use streaming to train whole-slides images with single image-level labels, by reducing GPU memory requirements with 99%.

    Python 79 10

  5. picai_labels picai_labels Public

    Annotations for the PI-CAI Challenge: Public Training and Development Dataset

    59 25

  6. pathology-hooknet pathology-hooknet Public

    Jupyter Notebook 58 11

Repositories

Showing 10 of 200 repositories
  • unicorn_eval Public
    DIAGNijmegen/unicorn_eval’s past year of commit activity
    Python 2 Apache-2.0 1 0 1 Updated Apr 25, 2025
  • unicorn_baseline Public

    This repository provides example code for a Docker container for the UNICORN Challenge, enabling foundation model submissions with automated data handling, processing, and necessary dependencies.

    DIAGNijmegen/unicorn_baseline’s past year of commit activity
    Python 6 Apache-2.0 1 0 2 Updated Apr 24, 2025
  • oncology-ULS-fast-for-challenge Public Forked from RianneAr/ULS_fast_for_challenge

    A version of the baseline ULS model that works with smaller input data and is more shallow. This version crops the inputs and then pads them after inference, so that it can run with the orignal ULS challenge.

    DIAGNijmegen/oncology-ULS-fast-for-challenge’s past year of commit activity
    Python 1 2 0 0 Updated Apr 24, 2025
  • rse-grand-challenge-forge Public

    Generation of challenge packs

    DIAGNijmegen/rse-grand-challenge-forge’s past year of commit activity
    Python 0 Apache-2.0 0 1 0 Updated Apr 24, 2025
  • DIAGNijmegen/unicorn_baseline_template’s past year of commit activity
    Python 2 Apache-2.0 0 2 0 Updated Apr 24, 2025
  • website-content Public

    This repository stores all the content for the diag websites.

    DIAGNijmegen/website-content’s past year of commit activity
    TeX 6 MIT 75 27 (1 issue needs help) 3 Updated Apr 22, 2025
  • rse-pyswot Public

    Python implementation of JetBrains/swot

    DIAGNijmegen/rse-pyswot’s past year of commit activity
    Python 1 Apache-2.0 1 0 0 Updated Apr 22, 2025
  • dragon_baseline Public

    Baseline training algorithm for the DRAGON challenge (dragon.grand-challenge.org)

    DIAGNijmegen/dragon_baseline’s past year of commit activity
    Python 2 Apache-2.0 1 0 0 Updated Apr 18, 2025
  • lightstream Public

    A Pytorch Lightning implementation for streaming convolutional networks

    DIAGNijmegen/lightstream’s past year of commit activity
    Jupyter Notebook 1 Apache-2.0 0 5 0 Updated Apr 17, 2025
  • llm_extractinator Public

    This project enables the efficient extraction of structured data from unstructured text using large language models (LLMs). It provides a flexible configuration system and supports a variety of tasks.

    DIAGNijmegen/llm_extractinator’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Apr 17, 2025