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@DeepGraphLearning

MilaGraph

Research group led by Prof. Jian Tang at Mila-Quebec AI Institute (https://mila.quebec/) focusing on graph representation learning and graph neural networks.

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  1. torchdrug torchdrug Public

    A powerful and flexible machine learning platform for drug discovery

    Python 1.5k 206

  2. ULTRA ULTRA Public

    A foundation model for knowledge graph reasoning

    Python 525 71

  3. GMNN GMNN Public

    Graph Markov Neural Networks

    Python 407 100

  4. GearNet GearNet Public

    GearNet and Geometric Pretraining Methods for Protein Structure Representation Learning, ICLR'2023 (https://arxiv.org/abs/2203.06125)

    Python 285 29

  5. NBFNet NBFNet Public

    Official implementation of Neural Bellman-Ford Networks (NeurIPS 2021)

    Python 210 30

  6. ConfGF ConfGF Public

    Implementation of Learning Gradient Fields for Molecular Conformation Generation (ICML 2021).

    Python 165 37

Repositories

Showing 10 of 49 repositories
  • GearBind Public

    Pretrainable geometric graph neural network for antibody affinity maturation

    DeepGraphLearning/GearBind’s past year of commit activity
    Python 52 Apache-2.0 7 7 0 Updated Mar 18, 2025
  • scCello Public

    [NeurIPS 2024 Spotlight] A cell-ontology guided transcriptome foundation model

    DeepGraphLearning/scCello’s past year of commit activity
    Python 14 1 0 1 Updated Mar 12, 2025
  • ProteinTutorial_AAAI2025 Public

    https://deepgraphlearning.github.io/ProteinTutorial_AAAI2025/

    DeepGraphLearning/ProteinTutorial_AAAI2025’s past year of commit activity
    CSS 5 MIT 0 0 0 Updated Feb 27, 2025
  • ULTRA Public

    A foundation model for knowledge graph reasoning

    DeepGraphLearning/ULTRA’s past year of commit activity
    Python 525 MIT 71 2 0 Updated Feb 3, 2025
  • GraphAny Public

    GraphAny: Fully-inductive Node Classification on Arbitrary Graphs

    DeepGraphLearning/GraphAny’s past year of commit activity
    Python 132 MIT 15 1 1 Updated Feb 3, 2025
  • S3F Public

    Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)

    DeepGraphLearning/S3F’s past year of commit activity
    Python 32 MIT 3 3 0 Updated Dec 3, 2024
  • MATH60630A_2024A Public
    DeepGraphLearning/MATH60630A_2024A’s past year of commit activity
    SCSS 0 0 0 0 Updated Nov 21, 2024
  • torchdrug Public

    A powerful and flexible machine learning platform for drug discovery

    DeepGraphLearning/torchdrug’s past year of commit activity
    Python 1,498 Apache-2.0 206 110 (1 issue needs help) 11 Updated Aug 12, 2024
  • graphvite Public

    GraphVite: A General and High-performance Graph Embedding System

    DeepGraphLearning/graphvite’s past year of commit activity
    C++ 1,251 Apache-2.0 154 54 0 Updated Jun 14, 2024
  • esm-s Public

    Structure-Informed Protein Language Model

    DeepGraphLearning/esm-s’s past year of commit activity
    Python 32 4 3 0 Updated Feb 15, 2024
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