DiamondLightSource · fallars · Jul 13, 2026 · May 7, 2026 · May 13, 2026 · May 15, 2026
diff --git a/e02/templates/mib2x-auto.yaml b/e02/templates/mib2x-auto.yaml
@@ -8,6 +8,7 @@ metadata:
     workflows.argoproj.io/title: ePSIC mib automatic conversion
     workflows.argoproj.io/description: |
       Convert MIB file to hdf5/hspy files
+    workflows.diamond.ac.uk/repository: "https://github.com/DiamondLightSource/imaging-workflows"
     workflows.diamond.ac.uk/parameter-schema: |
       {{- .Files.Get "schema/mib2x_auto_Schema.json" | nindent 6 }}
     workflows.diamond.ac.uk/ui-schema: |

diff --git a/e02/templates/mib2x.yaml b/e02/templates/mib2x.yaml
@@ -8,6 +8,7 @@ metadata:
     workflows.argoproj.io/title: ePSIC mib conversion
     workflows.argoproj.io/description: |
       Convert MIB file to hdf5/hspy files
+    workflows.diamond.ac.uk/repository: "https://github.com/DiamondLightSource/imaging-workflows"
     workflows.diamond.ac.uk/parameter-schema.mib_path: |
       {
         "type": "string"

diff --git a/e02/templates/ptyrex_basic.yaml b/e02/templates/ptyrex_basic.yaml
@@ -8,6 +8,7 @@ metadata:
     workflows.argoproj.io/title: Simple Ptyrex job submission
     workflows.argoproj.io/description: |
       Submit a Ptyrex job for a particular scan and projection within a given visit
+    workflows.diamond.ac.uk/repository: "https://github.com/DiamondLightSource/imaging-workflows"
     workflows.diamond.ac.uk/parameter-schema: |
       {{- .Files.Get "schema/ptyrex_Schema.json" | nindent 6}} 
     workflows.diamond.ac.uk/ui-schema: |

diff --git a/httomo/pipelines/visr.json b/httomo/pipelines/visr.json
@@ -21,8 +21,7 @@
         "module_path": "httomolibgpu.prep.normalize",
         "parameters": {
             "flats_multiplier": 1,
-            "darks_multiplier": 1,
-            "cutoff": 10
+            "darks_multiplier": 1
         }
     },
     {

diff --git a/httomo/templates/cor-sweep.yaml b/httomo/templates/cor-sweep.yaml
@@ -2,6 +2,8 @@ apiVersion: argoproj.io/v1alpha1
 kind: ClusterWorkflowTemplate
 metadata:
   name: httomo-cor-sweep
+  labels:
+    workflows.diamond.ac.uk/science-group-imaging: "true"
   annotations:
     workflows.diamond.ac.uk/repository: "https://github.com/DiamondLightSource/imaging-workflows"
     workflows.diamond.ac.uk/parameter-schema.input: |

diff --git a/httomo/templates/extract-raw-projections.yaml b/httomo/templates/extract-raw-projections.yaml
@@ -2,6 +2,8 @@ apiVersion: argoproj.io/v1alpha1
 kind: ClusterWorkflowTemplate
 metadata:
   name: extract-raw-projections
+  labels:
+    workflows.diamond.ac.uk/science-group-imaging: "true"
   annotations:
     workflows.diamond.ac.uk/repository: "https://github.com/DiamondLightSource/imaging-workflows"
 spec:

diff --git a/httomo/templates/httomo-gpu-template-test.yaml b/httomo/templates/httomo-gpu-template-test.yaml
@@ -2,6 +2,8 @@ apiVersion: argoproj.io/v1alpha1
 kind: ClusterWorkflowTemplate
 metadata:
   name: httomo-gpu-job
+  labels:
+    workflows.diamond.ac.uk/science-group-imaging: "true"
   annotations:
     workflows.diamond.ac.uk/repository: "https://github.com/DiamondLightSource/imaging-workflows"
 spec:

diff --git a/i14/notebooks/ptycho-tomo-phase.ipynb b/i14/notebooks/ptycho-tomo-phase.ipynb
@@ -88,6 +88,24 @@
    "cell_type": "markdown",
    "id": "2f61bb2f",
    "metadata": {},
+   "source": [
+    "## Set normalise boolean"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "e3300162-404a-4660-b4ac-136bbd517727",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "normalise = True if normalise.lower() == \"true\" else False"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "5d23b863-a0da-40f4-aa72-c5b5cc911c00",
+   "metadata": {},
    "source": [
     "## Initialise np array"
    ]

diff --git a/i14/notebooks/xanes_autoprocessing0.ipynb b/i14/notebooks/xanes_autoprocessing0.ipynb
@@ -10,7 +10,7 @@
    },
    "outputs": [],
    "source": [
-    "# default settings\n",
+    "# parameters\n",
     "inpath = \"\" # type: str\n",
     "outpath = \"\" # type: str\n",
     "edge_element = \"\" # type: str\n",
@@ -169,6 +169,22 @@
     "print(f\"The PNG file will be saved as {png_outpath}\")"
    ]
   },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "### Set normalised boolean\n"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "normalised = True if normalised.lower() == \"true\" else False"
+   ]
+  },
   {
    "cell_type": "markdown",
    "metadata": {},

diff --git a/i14/notebooks/xanes_point_autoprocessing0.ipynb b/i14/notebooks/xanes_point_autoprocessing0.ipynb
@@ -84,6 +84,22 @@
     "    raise FileNotFoundError(msg)"
    ]
   },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "### Set normalise boolean"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "normalise = True if normalise.lower() == \"true\" else False"
+   ]
+  },
   {
    "cell_type": "markdown",
    "metadata": {},

diff --git a/i14/notebooks/xanes_sparse_stack_autoprocessing0.ipynb b/i14/notebooks/xanes_sparse_stack_autoprocessing0.ipynb
@@ -10,6 +10,7 @@
    },
    "outputs": [],
    "source": [
+    "# parameters\n",
     "# outpath will be used to get outpath_nexus, outpath_mantis and outpath_complete for saving data, and outpath itself won't be used\n",
     "\n",
     "# default settings\n",
@@ -119,6 +120,22 @@
     "print(f\"HyperSpy version: {version('hyperspy')}\")"
    ]
   },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "### Set normalised"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "normalised = True if normalised.lower() == \"true\" else False"
+   ]
+  },
   {
    "cell_type": "markdown",
    "metadata": {},
@@ -191,22 +208,25 @@
     "\n",
     "for raw_data in file_list:\n",
     "    # windowing happens here for each file\n",
-    "    data = read_raw_data(raw_data)\n",
+    "    data = read_raw_data(raw_data, normalised)\n",
     "    \n",
     "    # window it\n",
     "    w_mca = window_mca(data[\"mca\"], lg_start, lg_end, data[\"scan_shape\"], data[\"scan_model\"])\n",
     "  \n",
-    "    # sum the I0\n",
-    "    I0_t = np.squeeze(data[\"I0_1\"] + data[\"I0_2\"] + data[\"I0_3\"] + data[\"I0_4\"])\n",
-    "    \n",
+    "    if normalised:\n",
+    "        # sum the I0\n",
+    "        I0_t = np.squeeze(data[\"I0_1\"] + data[\"I0_2\"] + data[\"I0_3\"] + data[\"I0_4\"])\n",
+    "        I0_total.append(I0_t)\n",
+    "    else:\n",
+    "        I0_total.append(np.ones_like(w_mca))\n",
+    "\n",
     "    # record everything\n",
     "    windowed.append(w_mca)\n",
     "    \n",
     "    energy_data.append(data[\"energy\"])\n",
     "    SampleX.append(data[\"x\"])\n",
     "    SampleY.append(data[\"y\"])\n",
     "    scan_shapes.append(data[\"scan_shape\"])\n",
-    "    I0_total.append(I0_t)\n",
     "    \n",
     "print(f\"Time reading raw data: {(time.perf_counter() - start)/60:.2f} min\")"
    ]
@@ -468,7 +488,8 @@
     "                     tol=tol_residual, \n",
     "                     niter_short=num_short_iteration, \n",
     "                     niter_final=num_final_iteration, \n",
-    "                     verbose=True)"
+    "                     verbose=True) \n",
+    "loop_asd.residuals = np.full(sum(loop_asd.num_iters) + loop_asd.rank_max, np.nan) \n"
    ]
   },
   {

diff --git a/i14/schema/dpcSchema.json b/i14/schema/dpcSchema.json
@@ -1,16 +1,19 @@
 {
   "type": "object",
   "properties": {
-    "scanNumbers": {
-      "type": "string",
-      "title": "Scan Numbers",
-      "description": "A list containing scan numbers to be processed. Eg. [274317] or [274317, 274318, 274319]"
+    "multiScan": {
+      "title": "Scans",
+      "type": "array",
+      "items":
+        {
+          "type": "object"
+        }
     },
     "outputFolder": {
       "type": "string",
       "title": "Output Folder",
       "description": "The full path of the output file"
     }
   },
-  "required": ["scanNumbers", "outputFolder"]
+  "required": ["multiScan", "outputFolder"]
 }
diff --git a/i14/schema/dpcUISchema.json b/i14/schema/dpcUISchema.json
@@ -3,7 +3,22 @@
   "elements": [
     {
       "type": "Control",
-      "scope": "#/properties/scanNumbers"
+      "scope": "#/properties/multiScan",
+      "options": {
+        "elementLabelProp": "scanRange",
+        "detail": {
+          "type": "VerticalLayout",
+          "elements": [
+            {
+              "type": "Control",
+              "scope": "#/properties/multiScan/items",
+              "options": {
+                "useScanRangeControl": true
+              }
+            }
+           ]
+        }
+      }
     },
     {
       "type": "Control",

diff --git a/i14/schema/xanesPointSchema.json b/i14/schema/xanesPointSchema.json
@@ -141,6 +141,7 @@
     "normalise": {
       "type": "boolean",
       "title": "Normalise",
+      "default": true,
       "description": "Whether to normalise the windowed intensity by 'adc_ionCh1a'"
     }
   },

diff --git a/i14/schema/xanesSchema.json b/i14/schema/xanesSchema.json
@@ -37,6 +37,7 @@
     "normalise": {
       "type": "boolean",
       "title": "Normalise",
+      "default": true,
       "description": "Whether to normalise the stack by I0"
     }
   },

diff --git a/i14/schema/xanesSparseSchema.json b/i14/schema/xanesSparseSchema.json
@@ -16,7 +16,8 @@
     },
     "normalise": {
       "type": "boolean",
-      "title": "Normalise"
+      "title": "Normalise",
+      "default": true
     },
     "edgeElement": {
       "type": "string",

diff --git a/i14/schema/xrd1dSchema.json b/i14/schema/xrd1dSchema.json
@@ -1,10 +1,13 @@
 {
   "type": "object",
   "properties": {
-    "scanNumbers": {
-      "type": "string",
-      "title": "Scan Numbers",
-      "description": "A list containing scan numbers to be processed. Eg. [274317] or [274317, 274318, 274319]"
+    "multiScan": {
+      "title": "Scans",
+      "type": "array",
+      "items":
+        {
+          "type": "object"
+        }
     },
     "outputFolder": {
       "type": "string",
@@ -49,7 +52,7 @@
     }
   },
   "required": [
-    "scanNumbers",
+    "multiScan",
     "outputFolder",
     "xrdProcessConfigUpload"
   ]

diff --git a/i14/schema/xrd1dUISchema.json b/i14/schema/xrd1dUISchema.json
@@ -3,7 +3,22 @@
   "elements": [
     {
       "type": "Control",
-      "scope": "#/properties/scanNumbers"
+      "scope": "#/properties/multiScan",
+      "options": {
+        "elementLabelProp": "scanRange",
+        "detail": {
+          "type": "VerticalLayout",
+          "elements": [
+            {
+              "type": "Control",
+              "scope": "#/properties/multiScan/items",
+              "options": {
+                "useScanRangeControl": true
+              }
+            }
+           ]
+        }
+      }
     },
     {
       "type": "Control",

diff --git a/i14/schema/xrd2dSchema.json b/i14/schema/xrd2dSchema.json
@@ -1,10 +1,13 @@
 {
   "type": "object",
   "properties": {
-    "scanNumbers": {
-      "type": "string",
-      "title": "Scan Numbers",
-      "description": "A list containing scan numbers to be processed. Eg. [274317] or [274317, 274318, 274319]"
+    "multiScan": {
+      "title": "Scans",
+      "type": "array",
+      "items":
+        {
+          "type": "object"
+        }
     },
     "outputFolder": {
       "type": "string",
@@ -28,7 +31,7 @@
     }
   },
   "required": [
-    "scanNumbers",
+    "multiScan",
     "outputFolder",
     "xrdProcessConfigUpload"
   ]

diff --git a/i14/schema/xrd2dUISchema.json b/i14/schema/xrd2dUISchema.json
@@ -3,7 +3,22 @@
   "elements": [
     {
       "type": "Control",
-      "scope": "#/properties/scanNumbers"
+      "scope": "#/properties/multiScan",
+      "options": {
+        "elementLabelProp": "scanRange",
+        "detail": {
+          "type": "VerticalLayout",
+          "elements": [
+            {
+              "type": "Control",
+              "scope": "#/properties/multiScan/items",
+              "options": {
+                "useScanRangeControl": true
+              }
+            }
+           ]
+        }
+      }
     },
     {
       "type": "Control",

diff --git a/i14/schema/xrfTomoSchema.json b/i14/schema/xrfTomoSchema.json
@@ -52,6 +52,7 @@
     "normalise": {
       "type": "boolean",
       "title": "Normalise",
+      "default": true,
       "description": "Whether to normalise the stack using the total mass of each projection."
     },
     "cor": {