GitHub Advanced Security / CodeQL
failed
Dec 2, 2025 in 2s
11 new alerts including 11 errors
Annotations
Check failure on line 14 in src/murfey/util/db.py
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Code scanning / CodeQL
Module-level cyclic import
Error
'CTF' may not be defined if module murfey.util.processing_db is imported before module murfey.util.db , as the definition of CTF occurs after the cyclic import of murfey.util.db.
Check failure on line 15 in src/murfey/util/db.py
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Code scanning / CodeQL
Module-level cyclic import
Error
'MotionCorrection' may not be defined if module murfey.util.processing_db is imported before module murfey.util.db , as the definition of MotionCorrection occurs after the cyclic import of murfey.util.db.
Check failure on line 16 in src/murfey/util/db.py
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Code scanning / CodeQL
Module-level cyclic import
Error
'ParticleClassificationGroup' may not be defined if module murfey.util.processing_db is imported before module murfey.util.db , as the definition of ParticleClassificationGroup occurs after the cyclic import of murfey.util.db.
Check failure on line 17 in src/murfey/util/db.py
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Code scanning / CodeQL
Module-level cyclic import
Error
'ParticlePicker' may not be defined if module murfey.util.processing_db is imported before module murfey.util.db , as the definition of ParticlePicker occurs after the cyclic import of murfey.util.db.
Check failure on line 18 in src/murfey/util/db.py
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Code scanning / CodeQL
Module-level cyclic import
Error
'RelativeIceThickness' may not be defined if module murfey.util.processing_db is imported before module murfey.util.db , as the definition of RelativeIceThickness occurs after the cyclic import of murfey.util.db.
Check failure on line 19 in src/murfey/util/db.py
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Code scanning / CodeQL
Module-level cyclic import
Error
'TiltImageAlignment' may not be defined if module murfey.util.processing_db is imported before module murfey.util.db , as the definition of TiltImageAlignment occurs after the cyclic import of murfey.util.db.
Check failure on line 20 in src/murfey/util/db.py
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Code scanning / CodeQL
Module-level cyclic import
Error
'Tomogram' may not be defined if module murfey.util.processing_db is imported before module murfey.util.db , as the definition of Tomogram occurs after the cyclic import of murfey.util.db.
Check failure on line 7 in src/murfey/util/processing_db.py
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Code scanning / CodeQL
Module-level cyclic import
Error
'AutoProcProgram' may not be defined if module murfey.util.db is imported before module murfey.util.processing_db , as the definition of AutoProcProgram occurs after the cyclic import of murfey.util.processing_db.
Check failure on line 7 in src/murfey/util/processing_db.py
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Code scanning / CodeQL
Module-level cyclic import
Error
'DataCollection' may not be defined if module murfey.util.db is imported before module murfey.util.processing_db , as the definition of DataCollection occurs after the cyclic import of murfey.util.processing_db.
Check failure on line 7 in src/murfey/util/processing_db.py
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Code scanning / CodeQL
Module-level cyclic import
Error
'Movie' may not be defined if module murfey.util.db is imported before module murfey.util.processing_db , as the definition of Movie occurs after the cyclic import of murfey.util.processing_db.
Check failure on line 7 in src/murfey/util/processing_db.py
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Code scanning / CodeQL
Module-level cyclic import
Error
'SearchMap' may not be defined if module murfey.util.db is imported before module murfey.util.processing_db , as the definition of SearchMap occurs after the cyclic import of murfey.util.processing_db.